View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14003_high_9 (Length: 409)
Name: NF14003_high_9
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14003_high_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 239 - 409
Target Start/End: Complemental strand, 45768556 - 45768386
Alignment:
| Q |
239 |
aattgaactcattatctatttattttgttataaacaattgtaaacaactattatagggagatgttgattattcattgataattatctgcaacttgtagac |
338 |
Q |
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| T |
45768556 |
aattgaacccattatctatttattttgttataatcaattgtaaacaactattatagggagatgttgattattcattgataagtatctgcaacttgtagac |
45768457 |
T |
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| Q |
339 |
atggacaaacaataaaatagattttaaatgaatccttactaaaatcatcaaaaccacaataactaaacctt |
409 |
Q |
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| T |
45768456 |
atggacaaacaataaaatatatttcaaatgaatccttactaaaatcatcaaaaccataataactaaacctt |
45768386 |
T |
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Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 45768704 - 45768598
Alignment:
| Q |
19 |
ccaaactcaatcactggattaggcagactaagagttcaaatatccatctcctaatatagtgttctcttctataactttggtcttttcttcc--aaaactt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
45768704 |
ccaaactcaatcactggattaggcagactaagagttcaaacatccatctcctaatatagtgttctcttctataactttggtcttttcttccgaaagactt |
45768605 |
T |
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| Q |
117 |
tgtattc |
123 |
Q |
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||||||| |
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| T |
45768604 |
tgtattc |
45768598 |
T |
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