View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14003_low_1 (Length: 697)
Name: NF14003_low_1
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14003_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 678
Target Start/End: Original strand, 2048195 - 2048854
Alignment:
| Q |
18 |
gaggctttggagctagcggataactttcactctctccaaattcaacacattcctagggtatttatttagttattggcctataatgtttaagttgccttgt |
117 |
Q |
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| T |
2048195 |
gaggctttggagctagcagataactttcactcactccagattcaacacattcctagggtatttatttagttattggtctataatgtttaagttgccctct |
2048294 |
T |
|
| Q |
118 |
ttcaacttggtactgctttgtggagttgaaaacaattaccttggtatttgagaatcattttgatctcttctgatttctaattctaatgcatatctatata |
217 |
Q |
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| T |
2048295 |
ctaaacttagtactgctttgtggagttgaaaattattactttggtatttgtgaatcattttgatctcttctgatttttaattctaatgcatatctatata |
2048394 |
T |
|
| Q |
218 |
agacgctatctgatcctagctagttatactctggaattagatatacctggttccaccttgaataaaaaatcagcttcccaccttgttatatattttgttc |
317 |
Q |
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| T |
2048395 |
agaagtcatgtgatcctagctagttatactctgaatttagatata-ctagttccactttgaataaaaaa-cagcat-ccagctagttatatattatgttc |
2048491 |
T |
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| Q |
318 |
aatctatgtacacaattcctaatatttgctcctgtatgtcaaagatcac------tagcaccaacatcattaggcgccttatta-tatgaataattacat |
410 |
Q |
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| T |
2048492 |
aatctatgtacacagttcctaatatttgctcctgtatatcaaagatcactagcagtagcaccaacatcattaggcaccttattattatgaatatttacat |
2048591 |
T |
|
| Q |
411 |
gcaaagatcactggcaccgtatcattacgttcctaattttatgaatatttacatgtagttatgtctagctatc-tttttattttatttagattacaact- |
508 |
Q |
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| T |
2048592 |
gcaaagatcactagcgtcatatcattatgttcctaattttatgaatatttacatgtagttatgtctagccatcttttttattttatttagattgcatctc |
2048691 |
T |
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| Q |
509 |
--ctccctctttttattgagtatttgctttgtggaaaactcaaataaacaaaaggtgaaggttggaaaaacttgcagtggttcaactcttgaattgacac |
606 |
Q |
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| T |
2048692 |
tcctccctctttttattgggtatttgctttgtggaaaactcaaataaacaaaagttggaggttggaaaaacttacagtggttcgactcttgaatcgacac |
2048791 |
T |
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| Q |
607 |
tcggcatcctatctatgttgttcatgatcacgcgcacaaattgcattaggctcctaattatatgaatatttt |
678 |
Q |
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| T |
2048792 |
tcggcatcctatctatgttgttcatgatcac---------ttgcattaggctcctaattatatgaatatttt |
2048854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 2083207 - 2083258
Alignment:
| Q |
131 |
tgctttgtggagttgaaaacaattaccttggtatttgagaatcattttgatc |
182 |
Q |
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| T |
2083207 |
tgctttgtggagttgaaaacaattacattggtatttgagaatcattttgatc |
2083258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 2054612 - 2054678
Alignment:
| Q |
264 |
ctggttccaccttgaataaaa-aatcagcttcccaccttgttatatattttgttcaatctatgtaca |
329 |
Q |
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| T |
2054612 |
ctggttccaccttgaataaaaaaatcagcatcctaactagttatatattttgttcaatctatgtaca |
2054678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 536 - 682
Target Start/End: Original strand, 2054796 - 2054942
Alignment:
| Q |
536 |
tgtggaaaactcaaataaacaaaaggtgaaggttggaaaaacttgcagtggttcaactcttgaattgacactcggcatcctatctatgttgttcatgatc |
635 |
Q |
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||||||||||||||||||| ||| | |||||| ||| | || | ||||||||||||||||| || | |||||||||||| ||| ||||||||| || |
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| T |
2054796 |
tgtggaaaactcaaataaatcgaagttcgaggttgaaaacatttacggtggttcaactcttgaaatggcgctcggcatcctagctacattgttcatgctc |
2054895 |
T |
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| Q |
636 |
acgcgcacaaattgcattaggctcctaattatatgaatattttcatt |
682 |
Q |
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| T |
2054896 |
acttgtaccagttgcattaggctcttaattatatgaacatttccatt |
2054942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 393 - 464
Target Start/End: Original strand, 2054722 - 2054793
Alignment:
| Q |
393 |
ttatatgaataattacatgcaaagatcactggcaccgtatcattacgttcctaattttatgaatatttacat |
464 |
Q |
| |
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| T |
2054722 |
ttatatgaatatttacatgcaaagatcacttgcaccatatcatcatgttcttatttatatgaatatttacat |
2054793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 341
Target Start/End: Original strand, 2062919 - 2062960
Alignment:
| Q |
302 |
gttatatattttgttcaatctatg--tacacaattcctaata |
341 |
Q |
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| T |
2062919 |
gttatatattttgttcaatctatgtctacacaattcctaata |
2062960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 607 - 677
Target Start/End: Original strand, 2083390 - 2083460
Alignment:
| Q |
607 |
tcggcatcctatctatgttgttcatgatcacgcgcacaaattgcattaggctcctaattatatgaatattt |
677 |
Q |
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| T |
2083390 |
tcggcaccctagctttattgttcaagatcactcgcaccaataacattagactcctaattatatgaatattt |
2083460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 2106992 - 2107045
Alignment:
| Q |
129 |
actgctttgtggagttgaaaacaattaccttggtatttgagaatcattttgatc |
182 |
Q |
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| T |
2106992 |
actgctttgtgaagttgaaaacaattagattggaatttggggatcattttgatc |
2107045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 2054523 - 2054571
Alignment:
| Q |
133 |
ctttgtggagttgaaaacaattaccttggtatttgagaatcattttgat |
181 |
Q |
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| T |
2054523 |
ctttgtggatttgcaaacaattgctttagtatttgagaatcattttgat |
2054571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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