View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14003_low_10 (Length: 400)
Name: NF14003_low_10
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14003_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 39982711 - 39983080
Alignment:
| Q |
18 |
caatcttaactctccgttttcacccctacgtagagattcatgagcggtaaaggtcatgcaaatatttttattaggaagtttctcattactttctgattaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39982711 |
caatcttaactctccgttttcacccctacgtagagattcatgagcggtaagggtcatgcaaatatttttattaggaagtttctcattactttctcattaa |
39982810 |
T |
|
| Q |
118 |
agcatgacaatgattacaggaacaacatatgaaaaatctatcttatacagattagtctcaattcaataagtctcagttcaacataaacacacacacctta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39982811 |
agcatgacaatgattacaggaacaacatatgaaaaatctatcatatacagattagtctcaattcaataagtctcagttcaacataaacacacacacctta |
39982910 |
T |
|
| Q |
218 |
gaaagagaactgcatccccagaaacaagattcttttggctaacaaaaatactccagccagtagtgagcagatgcctccttggctgacctgacaaagaata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39982911 |
gaaagagaactgcatccccagaaacaagattcttttggctaacaaaaatactccagccagtagtgagcagatgcctccttggctgacctgacaaagaata |
39983010 |
T |
|
| Q |
318 |
taacatggactttctgtttcattcatagtcaatatgcaatccaaccaacacagcaattcggtttcatctc |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39983011 |
taacatggactttctgtttcattcatagtcaatatgcaatccaaccaacacagcaattcggtttcatctc |
39983080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 202 - 312
Target Start/End: Complemental strand, 22236514 - 22236404
Alignment:
| Q |
202 |
aaacacacacaccttagaaagagaactgcatccccagaaacaagattcttttggctaacaaaaatactccagccagtagtgagcagatgcctccttggct |
301 |
Q |
| |
|
||||| ||| ||||||||||||| || ||||| ||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||| |||||||| |
|
|
| T |
22236514 |
aaacaaacataccttagaaagagcacagcatcaccagaaacaagattcttttggttcacaaaaatgctccagccagtagtgagtagatgccgccttggct |
22236415 |
T |
|
| Q |
302 |
gacctgacaaa |
312 |
Q |
| |
|
||||||||||| |
|
|
| T |
22236414 |
gacctgacaaa |
22236404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University