View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14003_low_12 (Length: 346)

Name: NF14003_low_12
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14003_low_12
NF14003_low_12
[»] chr6 (35 HSPs)
chr6 (192-346)||(26861820-26861975)
chr6 (1-150)||(26862014-26862167)
chr6 (202-346)||(26884372-26884516)
chr6 (215-346)||(27718228-27718359)
chr6 (215-345)||(26802650-26802780)
chr6 (209-342)||(28786489-28786622)
chr6 (209-342)||(28792610-28792743)
chr6 (215-346)||(27610851-27610982)
chr6 (209-341)||(28781351-28781483)
chr6 (215-346)||(27592869-27593000)
chr6 (215-346)||(27706251-27706382)
chr6 (215-346)||(27677463-27677594)
chr6 (215-346)||(27604554-27604685)
chr6 (215-346)||(27679153-27679284)
chr6 (215-346)||(27698343-27698474)
chr6 (215-343)||(27214630-27214758)
chr6 (215-343)||(27234470-27234598)
chr6 (236-346)||(27427476-27427586)
chr6 (234-346)||(27531065-27531177)
chr6 (297-346)||(27724776-27724825)
chr6 (202-256)||(26646776-26646830)
chr6 (202-256)||(26752744-26752798)
chr6 (202-324)||(27337901-27338023)
chr6 (202-324)||(27398641-27398763)
chr6 (202-324)||(26656218-26656340)
chr6 (202-324)||(26762189-26762311)
chr6 (201-293)||(28325737-28325829)
chr6 (264-343)||(27665015-27665094)
chr6 (202-291)||(28297549-28297638)
chr6 (202-291)||(28514435-28514524)
chr6 (207-343)||(26635900-26636036)
chr6 (207-343)||(26741866-26742002)
chr6 (207-343)||(26959376-26959512)
chr6 (299-343)||(28098302-28098346)
chr6 (314-346)||(31284495-31284527)
[»] scaffold0277 (2 HSPs)
scaffold0277 (209-346)||(4514-4651)
scaffold0277 (209-342)||(13475-13608)
[»] scaffold0349 (2 HSPs)
scaffold0349 (215-346)||(14205-14336)
scaffold0349 (215-346)||(3269-3401)
[»] scaffold0419 (1 HSPs)
scaffold0419 (209-342)||(7736-7869)
[»] scaffold0003 (1 HSPs)
scaffold0003 (236-346)||(59777-59887)
[»] chr4 (6 HSPs)
chr4 (236-346)||(18073969-18074079)
chr4 (209-249)||(18679397-18679437)
chr4 (209-249)||(18723915-18723955)
chr4 (209-249)||(18655307-18655347)
chr4 (209-249)||(18699230-18699270)
chr4 (209-249)||(18731334-18731374)
[»] scaffold0038 (1 HSPs)
scaffold0038 (201-293)||(117052-117144)
[»] chr1 (2 HSPs)
chr1 (207-251)||(28127507-28127551)
chr1 (208-251)||(28164192-28164235)
[»] chr2 (1 HSPs)
chr2 (207-289)||(3279967-3280049)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 7e-71; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 192 - 346
Target Start/End: Complemental strand, 26861975 - 26861820
Alignment:
Q  192 ggatttatgt-aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgtta 290  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26861975 ggatttatgttaagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagagcaactttccatctctgcaacctctccatgtta 26861876  T
Q  291 tccatttcattttgaaaccttttttcatgcttagccaatgcttcaccataactacc 346  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26861875 tccatatcattttgaaaccttttttcatgcttagccaatgcttcaccataaatacc 26861820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 26862167 - 26862014
Alignment:
Q  1 attcatatctattcacgtccaataagtttaattagtacacacactacaatcacgatcacatcattattta----caacaacaaaaattaatacttgtttg 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||| |||||||||||||||||||    
T  26862167 attcatatctattcacgtccaataagtttaattagtacacacactacaatcacgatcacatcattatttaattacaacaaaaaaaattaatacttgtttg 26862068  T
Q  97 ggaatataaataaaaatgtggttttcgatttaactttaaagatgagattactct 150  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26862067 ggaatataaataaaaatgtggttttctatttaactttaaagatgagattactct 26862014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 202 - 346
Target Start/End: Complemental strand, 26884516 - 26884372
Alignment:
Q  202 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcatt 301  Q
    ||||||| |||||| |||||||||||||||| |||||||||||| ||||  |||  || | |||||||| |||||||||||||||||||||| | |||||    
T  26884516 aagtgggatacccaagactaaaatggtagccggacaagttagcaacttgcctcatagccattttccatcgctgcaacctctccatgttatccttatcatt 26884417  T
Q  302 ttgaaaccttttttcatgcttagccaatgcttcaccataactacc 346  Q
    |||||||||||||||||| | ||||||||||||||||||||||||    
T  26884416 ttgaaaccttttttcatggtcagccaatgcttcaccataactacc 26884372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 215 - 346
Target Start/End: Original strand, 27718228 - 27718359
Alignment:
Q  215 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 314  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| || |||||||||| |||||||||||||||||||| | | |||||||||||||| |||    
T  27718228 aggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttattcttatcattttgaaacctcttt 27718327  T
Q  315 tcatgcttagccaatgcttcaccataactacc 346  Q
    ||||||| ||||||||||||||||||||||||    
T  27718328 tcatgctcagccaatgcttcaccataactacc 27718359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 215 - 345
Target Start/End: Complemental strand, 26802780 - 26802650
Alignment:
Q  215 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 314  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| || |||||||||| || ||||||||||||||||||| | ||||||||||||||||||    
T  26802780 aggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctccaacctctccatgttatccttatcattttgaaaccttttt 26802681  T
Q  315 tcatgcttagccaatgcttcaccataactac 345  Q
    ||||||| |||||||||||||||||| ||||    
T  26802680 tcatgctcagccaatgcttcaccatagctac 26802650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 209 - 342
Target Start/End: Complemental strand, 28786622 - 28786489
Alignment:
Q  209 gtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaac 308  Q
    ||||||||||||| |||||||||| |||||||||||||||||| |||| || |  ||||||   ||||||||||||||||||||| | ||||||||||||    
T  28786622 gtacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaac 28786523  T
Q  309 cttttttcatgcttagccaatgcttcaccataac 342  Q
    || |||||||||  ||||||||||||||||||||    
T  28786522 ctcttttcatgcccagccaatgcttcaccataac 28786489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 209 - 342
Target Start/End: Complemental strand, 28792743 - 28792610
Alignment:
Q  209 gtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaac 308  Q
    ||||||||||||| |||||||||| |||||||||||||||||| |||| || |  ||||||   ||||||||||||||||||||| | ||||||||||||    
T  28792743 gtacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaac 28792644  T
Q  309 cttttttcatgcttagccaatgcttcaccataac 342  Q
    || |||||||||  ||||||||||||||||||||    
T  28792643 ctcttttcatgcccagccaatgcttcaccataac 28792610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 215 - 346
Target Start/End: Original strand, 27610851 - 27610982
Alignment:
Q  215 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 314  Q
    |||||||  ||||||||| || ||||| ||||| ||| |||| || |||||||||| |||||||||||||||||||| | | |||||||||||||| |||    
T  27610851 aggactatcatggtagccggaaaagtttgcagcctggctcagagccactttccatccctgcaacctctccatgttattcttatcattttgaaacctcttt 27610950  T
Q  315 tcatgcttagccaatgcttcaccataactacc 346  Q
    ||||||| ||||||||||||||||||||||||    
T  27610951 tcatgctcagccaatgcttcaccataactacc 27610982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 209 - 341
Target Start/End: Complemental strand, 28781483 - 28781351
Alignment:
Q  209 gtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaac 308  Q
    ||||||||||||| |||||||||| |||||||||||||||||| |||| || |  ||||||   ||||||||||||||||||||| | ||||||||||||    
T  28781483 gtacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaac 28781384  T
Q  309 cttttttcatgcttagccaatgcttcaccataa 341  Q
    || ||||||||   |||||||||||||||||||    
T  28781383 ctcttttcatgtccagccaatgcttcaccataa 28781351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 215 - 346
Target Start/End: Original strand, 27592869 - 27593000
Alignment:
Q  215 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 314  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| ||  ||||||||| |||||||||||||||||| | |   |||||||||||||| |||    
T  27592869 aggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttt 27592968  T
Q  315 tcatgcttagccaatgcttcaccataactacc 346  Q
    ||||||| ||||||||||||||||||||||||    
T  27592969 tcatgctcagccaatgcttcaccataactacc 27593000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 215 - 346
Target Start/End: Original strand, 27706251 - 27706382
Alignment:
Q  215 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 314  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| ||  ||||||||| |||||||||||||||||| | |   |||||||||||||| |||    
T  27706251 aggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttt 27706350  T
Q  315 tcatgcttagccaatgcttcaccataactacc 346  Q
    ||||||| ||||||||||||||||||||||||    
T  27706351 tcatgctcagccaatgcttcaccataactacc 27706382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 215 - 346
Target Start/End: Original strand, 27677463 - 27677594
Alignment:
Q  215 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 314  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| ||  ||||||||| |||||||||||||||| | | |   |||||||||||||| |||    
T  27677463 aggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgcttttcggatcattttgaaacctcttt 27677562  T
Q  315 tcatgcttagccaatgcttcaccataactacc 346  Q
    ||||||| ||||||||||||||||||||||||    
T  27677563 tcatgctcagccaatgcttcaccataactacc 27677594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 215 - 346
Target Start/End: Original strand, 27604554 - 27604685
Alignment:
Q  215 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 314  Q
    |||||||  ||||||||| || ||||||||||| ||| |||| || |||||||||| |||||||||||  |||||||||   ||||||||||||||||||    
T  27604554 aggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaaccttttt 27604653  T
Q  315 tcatgcttagccaatgcttcaccataactacc 346  Q
    | ||||| ||||||||||| ||| ||||||||    
T  27604654 ttatgctcagccaatgcttgaccgtaactacc 27604685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 215 - 346
Target Start/End: Complemental strand, 27679284 - 27679153
Alignment:
Q  215 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 314  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| ||   ||||||||  ||||||||||||||||| | |   |||||||||||||| |||    
T  27679284 aggactatcatggtagccggacaagttagcagcctggctcagagcctttttccatccttgcaacctctccatgtttttcggatcattttgaaacctcttt 27679185  T
Q  315 tcatgcttagccaatgcttcaccataactacc 346  Q
    ||||||| ||||||||||||||||||||||||    
T  27679184 tcatgctcagccaatgcttcaccataactacc 27679153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 215 - 346
Target Start/End: Original strand, 27698343 - 27698474
Alignment:
Q  215 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 314  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| ||  ||||||||| |||||||||||||||||| | |   |||||||||||||| |||    
T  27698343 aggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttt 27698442  T
Q  315 tcatgcttagccaatgcttcaccataactacc 346  Q
    ||||||| |||||||||||  |||||||||||    
T  27698443 tcatgctcagccaatgctttgccataactacc 27698474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 343
Target Start/End: Complemental strand, 27214758 - 27214630
Alignment:
Q  215 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 314  Q
    ||||||| |||| ||||| || ||||||||||||||||| || || |  |||||| ||||||||| ||||||||| ||| | | |||||||||||| | |    
T  27214758 aggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctct 27214659  T
Q  315 tcatgcttagccaatgcttcaccataact 343  Q
    ||||||||||| |  ||||||||||||||    
T  27214658 tcatgcttagcaagcgcttcaccataact 27214630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 343
Target Start/End: Original strand, 27234470 - 27234598
Alignment:
Q  215 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 314  Q
    ||||||| |||| ||||| || ||||||||||||||||| || || |  |||||| ||||||||| ||||||||| ||| | | |||||||||||| | |    
T  27234470 aggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctct 27234569  T
Q  315 tcatgcttagccaatgcttcaccataact 343  Q
    ||||||||||| |  ||||||||||||||    
T  27234570 tcatgcttagcaagcgcttcaccataact 27234598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 236 - 346
Target Start/End: Original strand, 27427476 - 27427586
Alignment:
Q  236 caagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttttcatgcttagccaatgcttca 335  Q
    ||||||||||||  |  |||| || |||||||||  |||||||||||||||||| | | | |||||||||||||| |||||||||| ||||||||||| |    
T  27427476 caagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgctcagccaatgcttta 27427575  T
Q  336 ccataactacc 346  Q
    ||||| |||||    
T  27427576 ccatacctacc 27427586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 346
Target Start/End: Original strand, 27531065 - 27531177
Alignment:
Q  234 gacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttttcatgcttagccaatgctt 333  Q
    ||||||||||| |||||| |||| ||  ||||||||  ||||||||||||  |||||||| | |||||||||||| |||||| ||||  ||| |||||||    
T  27531065 gacaagttagccgcttggctcagagcttctttccattgctgcaacctctcagtgttatccttatcattttgaaacttttttttatgcacagctaatgctt 27531164  T
Q  334 caccataactacc 346  Q
    ||||||| |||||    
T  27531165 caccatatctacc 27531177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 27724776 - 27724825
Alignment:
Q  297 tcattttgaaaccttttttcatgcttagccaatgcttcaccataactacc 346  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  27724776 tcattttgaaacctcttttcatgctcagccaatgcttcaccataactacc 27724825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 26646830 - 26646776
Alignment:
Q  202 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcag 256  Q
    |||||||||||||||||||| ||||||| || |||||||||||||||||| ||||    
T  26646830 aagtggggtacccaggactataatggtatccggacaagttagcagcttgggtcag 26646776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 26752798 - 26752744
Alignment:
Q  202 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcag 256  Q
    |||||||||||||||||||| ||||||| || |||||||||||||||||| ||||    
T  26752798 aagtggggtacccaggactataatggtatccggacaagttagcagcttgggtcag 26752744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 324
Target Start/End: Original strand, 27337901 - 27338023
Alignment:
Q  202 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcatt 301  Q
    |||||||||||||  |||||||||||| ||| || ||||||||||||||| | || || |  |||||| ||| ||||||||||||||| ||| | | |||    
T  27337901 aagtggggtacccttgactaaaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttatt 27338000  T
Q  302 ttgaaaccttttttcatgcttag 324  Q
    ||| ||| | | |||||||||||    
T  27338001 ttggaacttatcttcatgcttag 27338023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 324
Target Start/End: Original strand, 27398641 - 27398763
Alignment:
Q  202 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcatt 301  Q
    |||||||||||||  |||||||||||| ||| || ||||||||||||||| | || || |  |||||| ||| ||||||||||||||| ||| | | |||    
T  27398641 aagtggggtacccttgactaaaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttatt 27398740  T
Q  302 ttgaaaccttttttcatgcttag 324  Q
    ||| ||| | | |||||||||||    
T  27398741 ttggaacttatcttcatgcttag 27398763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 324
Target Start/End: Complemental strand, 26656340 - 26656218
Alignment:
Q  202 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcatt 301  Q
    |||||||||||||  ||||| |||||||||| |||||||| ||||||| | |||| || |  ||||||  || |||||||| |||||| ||| | | |||    
T  26656340 aagtggggtacccttgactacaatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttatt 26656241  T
Q  302 ttgaaaccttttttcatgcttag 324  Q
    ||| ||| | |||||||||||||    
T  26656240 ttggaacttcttttcatgcttag 26656218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 324
Target Start/End: Complemental strand, 26762311 - 26762189
Alignment:
Q  202 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcatt 301  Q
    |||||||||||||  ||||| |||||||||| |||||||| ||||||| | |||| || |  ||||||  || |||||||| |||||| ||| | | |||    
T  26762311 aagtggggtacccttgactacaatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttatt 26762212  T
Q  302 ttgaaaccttttttcatgcttag 324  Q
    ||| ||| | |||||||||||||    
T  26762211 ttggaacttcttttcatgcttag 26762189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 293
Target Start/End: Complemental strand, 28325829 - 28325737
Alignment:
Q  201 taagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatcc 293  Q
    ||||| || ||||||||||| ||||||| |||||| |||||||||| |||  | || || |  |||||| ||||||||||||||||| |||||    
T  28325829 taagtaggttacccaggactgaaatggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccatgctatcc 28325737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 343
Target Start/End: Original strand, 27665015 - 27665094
Alignment:
Q  264 ttccatctctgcaacctctccatgttatccatttcattttgaaaccttttttcatgcttagccaatgcttcaccataact 343  Q
    |||||| || |||||| ||||||||| ||||| ||||||||||||     |||||||||||| | |||||||||||||||    
T  27665015 ttccatttcagcaaccgctccatgttttccatgtcattttgaaactccacttcatgcttagcaagtgcttcaccataact 27665094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 28297549 - 28297638
Alignment:
Q  202 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttat 291  Q
    |||||||||||| |||| | ||||||| ||| || |||||||||| |||  | || |||   |||||| |||||||||||||||||||||    
T  28297549 aagtggggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttat 28297638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 28514524 - 28514435
Alignment:
Q  202 aagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttat 291  Q
    |||||||||||| |||| | ||||||| ||| || |||||||||| |||  | || |||   |||||| |||||||||||||||||||||    
T  28514524 aagtggggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttat 28514435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 343
Target Start/End: Complemental strand, 26636036 - 26635900
Alignment:
Q  207 gggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaa 306  Q
    ||||||||| || | ||||||| ||| || ||||||||||||||||| || ||    |||||| || |||||| ||||||||| ||| |   ||||||||    
T  26636036 gggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttgaa 26635937  T
Q  307 accttttttcatgcttagccaatgcttcaccataact 343  Q
    ||   | |||||||||||| |  ||||||||||||||    
T  26635936 actgatcttcatgcttagcaagcgcttcaccataact 26635900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 343
Target Start/End: Complemental strand, 26742002 - 26741866
Alignment:
Q  207 gggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaa 306  Q
    ||||||||| || | ||||||| ||| || ||||||||||||||||| || ||    |||||| || |||||| ||||||||| ||| |   ||||||||    
T  26742002 gggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttgaa 26741903  T
Q  307 accttttttcatgcttagccaatgcttcaccataact 343  Q
    ||   | |||||||||||| |  ||||||||||||||    
T  26741902 actgatcttcatgcttagcaagcgcttcaccataact 26741866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 343
Target Start/End: Complemental strand, 26959512 - 26959376
Alignment:
Q  207 gggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaa 306  Q
    ||||||||| || | ||||||| ||| || ||||||||||||||||| || ||    |||||| || |||||| ||||||||| ||| |   ||||||||    
T  26959512 gggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccgctccatgttttccttgctattttgaa 26959413  T
Q  307 accttttttcatgcttagccaatgcttcaccataact 343  Q
    ||   | |||||||||||| |  ||||||||||||||    
T  26959412 actgctcttcatgcttagcaagcgcttcaccataact 26959376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 28098302 - 28098346
Alignment:
Q  299 attttgaaaccttttttcatgcttagccaatgcttcaccataact 343  Q
    |||||| ||||| | |||||||||||| |||||||||||||||||    
T  28098302 attttggaacctctcttcatgcttagctaatgcttcaccataact 28098346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 31284527 - 31284495
Alignment:
Q  314 ttcatgcttagccaatgcttcaccataactacc 346  Q
    ||||||||||||||||||||| |||||||||||    
T  31284527 ttcatgcttagccaatgcttctccataactacc 31284495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 209 - 346
Target Start/End: Original strand, 4514 - 4651
Alignment:
Q  209 gtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaac 308  Q
    ||||||| ||||| |||||||||| |||||||||||||||||| |||| || |  ||||||   ||||||||||||||||||| | | ||||||||||||    
T  4514 gtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttattcttatcattttgaaac 4613  T
Q  309 cttttttcatgcttagccaatgcttcaccataactacc 346  Q
    || |||||||||| ||||||||||||||||||||||||    
T  4614 ctcttttcatgctcagccaatgcttcaccataactacc 4651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 209 - 342
Target Start/End: Original strand, 13475 - 13608
Alignment:
Q  209 gtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaac 308  Q
    ||||||| ||||| |||||||||| |||||||||||||||||| |||| || |  ||||||   ||||| | ||||||||||| | | ||||||||||||    
T  13475 gtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaac 13574  T
Q  309 cttttttcatgcttagccaatgcttcaccataac 342  Q
    || ||||||||   ||||||||||||||||||||    
T  13575 ctcttttcatgtccagccaatgcttcaccataac 13608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 215 - 346
Target Start/End: Original strand, 14205 - 14336
Alignment:
Q  215 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttt 314  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| ||  ||||||||| |||||||||||||||||| | |   |||||||||||||| |||    
T  14205 aggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttt 14304  T
Q  315 tcatgcttagccaatgcttcaccataactacc 346  Q
    ||||||| ||||||||||||||||||||||||    
T  14305 tcatgctcagccaatgcttcaccataactacc 14336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 215 - 346
Target Start/End: Original strand, 3269 - 3401
Alignment:
Q  215 aggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatg-ttatccatttcattttgaaacctttt 313  Q
    |||||||  ||||||||| |||||||||||||| ||| |||| || |||||||||| |||||||||||||||| || | |   |||||||||||||| ||    
T  3269 aggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttttttcggatcattttgaaacctctt 3368  T
Q  314 ttcatgcttagccaatgcttcaccataactacc 346  Q
    |||||||| ||||||||||||||||||||||||    
T  3369 ttcatgctcagccaatgcttcaccataactacc 3401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 209 - 342
Target Start/End: Complemental strand, 7869 - 7736
Alignment:
Q  209 gtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaac 308  Q
    ||||||| ||||| |||||||||| |||||||||||||||||| |||| || |  ||||||   ||||| | ||||||||||| | | ||||||||||||    
T  7869 gtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaac 7770  T
Q  309 cttttttcatgcttagccaatgcttcaccataac 342  Q
    || ||||||||   ||||||||||||||||||||    
T  7769 ctcttttcatgtccagccaatgcttcaccataac 7736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 236 - 346
Target Start/End: Complemental strand, 59887 - 59777
Alignment:
Q  236 caagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttttcatgcttagccaatgcttca 335  Q
    ||||||||||||  |  |||| || |||||||||  |||||||||||||||||| | | | |||||||||||||| |||||||||| ||||||||||| |    
T  59887 caagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgctcagccaatgcttta 59788  T
Q  336 ccataactacc 346  Q
    ||||| |||||    
T  59787 ccatacctacc 59777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 236 - 346
Target Start/End: Complemental strand, 18074079 - 18073969
Alignment:
Q  236 caagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatccatttcattttgaaaccttttttcatgcttagccaatgcttca 335  Q
    ||||||||||||  |  |||| || |||||||||  |||||||||||||||||| | | | |||||||||||||| |||||||||| ||||||||||| |    
T  18074079 caagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgctcagccaatgcttta 18073980  T
Q  336 ccataactacc 346  Q
    ||||| |||||    
T  18073979 ccatacctacc 18073969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 18679397 - 18679437
Alignment:
Q  209 gtacccaggactaaaatggtagcctgacaagttagcagctt 249  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  18679397 gtacccaggactaaaatggtagccggacaagttagcagctt 18679437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 18723915 - 18723955
Alignment:
Q  209 gtacccaggactaaaatggtagcctgacaagttagcagctt 249  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  18723915 gtacccaggactaaaatggtagccggacaagttagcagctt 18723955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 18655307 - 18655347
Alignment:
Q  209 gtacccaggactaaaatggtagcctgacaagttagcagctt 249  Q
    ||||||||||||| |||||||||| ||||||||||||||||    
T  18655307 gtacccaggactagaatggtagccggacaagttagcagctt 18655347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 18699230 - 18699270
Alignment:
Q  209 gtacccaggactaaaatggtagcctgacaagttagcagctt 249  Q
    |||||||| ||||||||||||||| ||||||||||||||||    
T  18699230 gtacccagaactaaaatggtagccggacaagttagcagctt 18699270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 18731334 - 18731374
Alignment:
Q  209 gtacccaggactaaaatggtagcctgacaagttagcagctt 249  Q
    ||||||| |||||||||||||||| ||||||||||||||||    
T  18731334 gtacccatgactaaaatggtagccggacaagttagcagctt 18731374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 293
Target Start/End: Complemental strand, 117144 - 117052
Alignment:
Q  201 taagtggggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgttatcc 293  Q
    ||||| || ||||||||||| ||||||| |||||| |||||||||| |||  | || || |  |||||| ||||||||||||||||| |||||    
T  117144 taagtaggttacccaggactgaaatggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccatgctatcc 117052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 28127507 - 28127551
Alignment:
Q  207 gggtacccaggactaaaatggtagcctgacaagttagcagcttgg 251  Q
    |||||||| |||||| |||||||||| ||||||||||||||||||    
T  28127507 gggtaccctggactataatggtagccggacaagttagcagcttgg 28127551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 28164192 - 28164235
Alignment:
Q  208 ggtacccaggactaaaatggtagcctgacaagttagcagcttgg 251  Q
    ||||||| |||||| |||||||||| ||||||||||||||||||    
T  28164192 ggtaccctggactataatggtagccggacaagttagcagcttgg 28164235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 289
Target Start/End: Complemental strand, 3280049 - 3279967
Alignment:
Q  207 gggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagggcaactttccatctctgcaacctctccatgtt 289  Q
    ||||||| |||| ||||||||| ||| ||||||||||| |||||||| || || |  |||||| | |||||||||| ||||||    
T  3280049 gggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 3279967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University