View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14003_low_13 (Length: 330)
Name: NF14003_low_13
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14003_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 35522148 - 35522450
Alignment:
| Q |
19 |
aaactaacctcaaacataatataaaatttagttgattgttaatactttgcttgatctataaaaataataagtgtgttctcaaagtaccttttataagaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35522148 |
aaactaacctcaaacataatataaaatttagttgattgttaatactttgcttgatctataaaaataataagtgtgttctcaaagtaccttttataagaag |
35522247 |
T |
|
| Q |
119 |
aatttgttccacttaaataaaaggtttattgaagaaaaatgtatattaattgaaaggtttttatcttcttaaaaggcaaagaaattttattaatgtaaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35522248 |
aatttgttccacttaaataaaaggtttattgaagaaaaatgtatattaattcaaaggtttttatcttattaaaaggcaaagaaattttattaatgtaaat |
35522347 |
T |
|
| Q |
219 |
acagctatcagaagtagtgcacgagtggaaaaatgcacatattatgattggaacatatgcatgtctagtctagaaccacgactacaaactgacaacaaag |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35522348 |
acagctatcagaagtagtgcacgagtggaaaaatgtacatattatgattggaacatatgcat-----gtctagaaccacgactacaaactgacaacaaag |
35522442 |
T |
|
| Q |
319 |
caagccta |
326 |
Q |
| |
|
|||||||| |
|
|
| T |
35522443 |
caagccta |
35522450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University