View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14003_low_15 (Length: 323)
Name: NF14003_low_15
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14003_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 21 - 296
Target Start/End: Original strand, 6247767 - 6248042
Alignment:
| Q |
21 |
agatgctgtgattgtgagaaacagtgacccaaaacacatgcttaaatgttgctttcctttttacttcgctctccacgagagttgcaagtaaagtttttcc |
120 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
6247767 |
agatgctataattgtgagaaacagtgacccaaaacacatgcttaaaagttgctttcctttttacttcattctccacgagagttgcatgtaaagtttttcc |
6247866 |
T |
|
| Q |
121 |
cgctcctcccattccatatatgccaatgacagagactttatcatcatcaagtagtttcaacactttatggatattttcatctaaactcttcccgataaat |
220 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||| ||||| |||| |
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| T |
6247867 |
tactcctcccattccatatatgccaatgacaaagactttatcatcgtcaagttgtttcaacactttatggattttttcatctaatctccccccgacaaat |
6247966 |
T |
|
| Q |
221 |
tcggtcgacaaattgagaggcttctttttcttgtgtcgtttgatattgtcgatcaaattatttatctcatgaatgt |
296 |
Q |
| |
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|| || |||||| ||| |||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |
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| T |
6247967 |
tcagttgacaaagtgaaaggcttctttttcttgtgtcgtttcatattgtcgatgaaatgatttatctcatgaatgt |
6248042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 6213379 - 6213607
Alignment:
| Q |
20 |
gagatgctgtgattgtgagaaacagtgacccaaaacacatgcttaaatgttgctttcctttttacttcgctctccacgagagttgcaagtaaagtttttc |
119 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
6213379 |
gagatgctgtaattgtgagaaacagtgacccaaaacacatgcttaaaagttgctttcctttttacttcattttccacgagagttgcaagtaaagtttttc |
6213478 |
T |
|
| Q |
120 |
ccgctcctcccattccatatatgccaatgacagagactttatcatcatcaagtagtttcaacactttatggatattttcatctaaactcttcccgataaa |
219 |
Q |
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|| ||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |||||||||||||| ||| || ||||| ||| |
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| T |
6213479 |
ccactcctcccattccatatatgccaatgacaaagactttatcatcagcaaggagtttcaacacttcatggatattttcatttaatttcgacccgacaaa |
6213578 |
T |
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| Q |
220 |
ttcggtcgacaaattgagaggcttctttt |
248 |
Q |
| |
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||| |||| |||| |||||||||| |||| |
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| T |
6213579 |
ttcagtcggcaaagtgagaggcttatttt |
6213607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 6180945 - 6181221
Alignment:
| Q |
20 |
gagatgctgtgattgtgagaaacagtgacccaaaacacatgcttaaatgttgctttcctttttacttcgctctccacgagagttgcaagtaaagtttttc |
119 |
Q |
| |
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|||||||| | ||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6180945 |
gagatgctataattttgagaaacagtgacccaaaacacatccttaaaagttgctttcctttttacttcattctccacgagagttgcaagtaaagtttttc |
6181044 |
T |
|
| Q |
120 |
ccgctcctcccattccatatatgccaatgacagagactttatcatcatcaagtagtttcaacactttatggatattttcatctaaactcttcccgataaa |
219 |
Q |
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| ||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| | |||||||| |||||| ||| ||||| ||| |
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| T |
6181045 |
ctactcctcccattccatatatgccaatgacaaagactttatcatcgtcaagttgtttcaacacttcacagatatttttatctaatctccccccgacaaa |
6181144 |
T |
|
| Q |
220 |
ttcggtcgacaaattgagaggcttctttttcttgtgtcgtttgatattgtcgatcaaattatttatctcatgaatgt |
296 |
Q |
| |
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||| || |||||| ||| ||||||||||||||||| ||| |||||| |||||| |||||||||| |||||||| |
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| T |
6181145 |
ttcagttgacaaagtgaaaggcttctttttcttgtaatctttcatattgatgatcaacttatttatcttatgaatgt |
6181221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 6237827 - 6237968
Alignment:
| Q |
20 |
gagatgctgtgattgtgagaaacagtgacccaaaacacatgcttaaatgttgctttcctttttacttcgctctccacgagagttgcaagtaaagtttttc |
119 |
Q |
| |
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|||||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6237827 |
gagatgctataattgtgagaaacagtgacccaaaacacatccttaaaagttgctttcctttttacttcattctccacgagagttgcaagtaaagtttttc |
6237926 |
T |
|
| Q |
120 |
ccgctcctcccattccatatatgccaatgacagagactttat |
161 |
Q |
| |
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| |||||||||||||| |||||||||| ||| | ||||||| |
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| T |
6237927 |
cgactcctcccattccacatatgccaataacaaacactttat |
6237968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 6106560 - 6106708
Alignment:
| Q |
20 |
gagatgctgtgattgtgagaaacagtgacccaaaacacatgcttaaatgttgctttcctttttacttcgctctccacgagagttgcaagtaaagtttttc |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| ||||| |||||| |||| |||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
6106560 |
gagatgctatgattgtgagaaacagtgatccaaatcacatccttaaaagttggtttcctttttccttccttctccacgagagttgcaagtaaagtttttc |
6106659 |
T |
|
| Q |
120 |
ccgctcctcccattccatatatgccaatgacagagactttatcatcatc |
168 |
Q |
| |
|
|| | |||||||||||| |||||||||| ||| ||||||| |||||||| |
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| T |
6106660 |
ccacacctcccattccacatatgccaattacaaagactttgtcatcatc |
6106708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 6208528 - 6208673
Alignment:
| Q |
20 |
gagatgctgtgattgtgagaaacagtgacccaaaacacatgcttaaatgttgctttcctttttacttcgctctccacgagagttgcaagtaaagtttttc |
119 |
Q |
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|||||||| | ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
6208528 |
gagatgctataattgtgagaaacagtgacccaaaacacatccttaaaacttgctttcctttttacttcattctccacaagagttgcaagtaaagtttttc |
6208627 |
T |
|
| Q |
120 |
ccgctcctcccattccatatatgccaatgacagagactttatcatc |
165 |
Q |
| |
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| |||||||||||||| ||||||||| ||| | ||||||||||| |
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| T |
6208628 |
cgactcctcccattccacatatgccaacaacaaacactttatcatc |
6208673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 6089407 - 6089516
Alignment:
| Q |
38 |
gaaacagtgacccaaaacacatgcttaaatgttgctttcctttttacttcgctctccacgagagttgcaagtaaagtttttcccgctcctcccattccat |
137 |
Q |
| |
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|||||||| ||||||||||||| | || | || ||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
6089407 |
gaaacagtaacccaaaacacatctatgaaaggtggtttcctttttacttcattctcgacgagagttgcaagtaaagtttttcccactccccccattccat |
6089506 |
T |
|
| Q |
138 |
atatgccaat |
147 |
Q |
| |
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|||| ||||| |
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| T |
6089507 |
atataccaat |
6089516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 289
Target Start/End: Original strand, 6094826 - 6095043
Alignment:
| Q |
72 |
ctttcctttttacttcgctctccacgagagttgcaagtaaagtttttcccgctcctcccattccatatatgccaatgacagagactttatcatcatcaag |
171 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| || ||||| ||| | || | || || || || |
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| T |
6094826 |
ctttcctttttacttcattctccacaagagttgcaagtaaagtttttcccactcctcccattccatggataccaataacaaatacatcgtcttcctctag |
6094925 |
T |
|
| Q |
172 |
tagtttcaacactttatggatattttcatctaaactcttcccgataaattcggtcgacaaattgagaggcttctttttcttgtgtcgtttgatattgtcg |
271 |
Q |
| |
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||| ||||||||| | ||||||| | ||| | | || | |||||| ||||||||| |||||||||| | ||||||||||||||| |||| | | |
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| T |
6094926 |
aagtctcaacacttggtcgatatttatgtataatgtttctccaacaaattcagtcgacaaaatgagaggcttttctttcttgtgtcgtttcatatctttg |
6095025 |
T |
|
| Q |
272 |
atcaaattatttatctca |
289 |
Q |
| |
|
||||| ||||||| |||| |
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| T |
6095026 |
atcaatttatttacctca |
6095043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 6234957 - 6234985
Alignment:
| Q |
31 |
attgtgagaaacagtgacccaaaacacat |
59 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
6234957 |
attgtgagaaacagtgacccaaaacacat |
6234985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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