View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14003_low_16 (Length: 307)
Name: NF14003_low_16
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14003_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 24 - 298
Target Start/End: Original strand, 29157409 - 29157683
Alignment:
| Q |
24 |
gcaatagctttaggttttttcggggacattggaagcaactcacaatttaataattgttttgttttataactcttctgtttgtttggaaccatgtgaatgt |
123 |
Q |
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| T |
29157409 |
gcaatagctttaggtttcttcggggacattggaagcaactcacaatttaataattgttttgttttataactcttctgtttgtttggaaccatgtgaatgt |
29157508 |
T |
|
| Q |
124 |
cactaatacatttatgcattttagtccttttccttattcatttctttacatgccatctctcttctaatttttcatccaattcaaccattcaactttcagt |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29157509 |
cactaatacatttatgcattttagtccttttccttattcatttctttacatgccatctctcttttaatttttcatccaattcaaccattcaactttcagt |
29157608 |
T |
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| Q |
224 |
ttttccttgtttcttttatgtaattgtggtttgtgtcatgtcatgggtatatgtctatggaaagcctattcttct |
298 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29157609 |
ttttccttgtttcttttatgtaattgtggtttgtttcatgtcatgggtatatgtctatggaaagcctattcttct |
29157683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 2583668 - 2583785
Alignment:
| Q |
77 |
ttgttttgttttataactcttctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttccttattcatttctttacatgc |
176 |
Q |
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|||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2583668 |
ttgttttgttttgtaactcttctctttgtttggaaacatgtgaatgtcactaatacatttatgcattttagtccttttccttattcatttatttacatgc |
2583767 |
T |
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| Q |
177 |
catctctcttctaatttt |
194 |
Q |
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| T |
2583768 |
catctctcttttaatttt |
2583785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 121 - 250
Target Start/End: Original strand, 2596498 - 2596628
Alignment:
| Q |
121 |
tgtcactaatacatttatgcattttagtccttttccttattcatttctttacatgccatctctcttctaatttttcatccaattcaaccattcaactttc |
220 |
Q |
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|||||||||||||||||||| ||| | ||||||||||| ||||||| ||||||| | ||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
2596498 |
tgtcactaatacatttatgcctttaaatccttttccttgttcatttttttacattctatctctcttttaatttttcatccaattcaaccattcgactttc |
2596597 |
T |
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| Q |
221 |
agtttttccttgtttctttt-atgtaattgt |
250 |
Q |
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| T |
2596598 |
agtttttccatgtttcttttaatgtaattgt |
2596628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 2596431 - 2596500
Alignment:
| Q |
32 |
tttaggttttttcggggacattggaagcaactcacaatttaataattgttttgttttataactcttctgt |
101 |
Q |
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||||||||| |||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2596431 |
tttaggtttcttcgaagacatttgaagcaactcacaatgtaataattgttttgttttataactcttctgt |
2596500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 2584987 - 2585051
Alignment:
| Q |
79 |
gttttgttttataactctt---ctgtttgtttggaaccatgtgaatgtcactaatacatttatgc |
140 |
Q |
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||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||||||| |
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| T |
2584987 |
gttttgttttataactcttcttctgtttgtttggaaacatgtaaatgtcactaattcatttatgc |
2585051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 2581743 - 2581797
Alignment:
| Q |
32 |
tttaggttttttcggggacattggaagcaactcacaatttaataattgttttgtt |
86 |
Q |
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||||||||| |||| |||||| |||||||||||||||||||||||| ||||||| |
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| T |
2581743 |
tttaggtttcttcgaagacatttgaagcaactcacaatttaataatttttttgtt |
2581797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 68 - 250
Target Start/End: Original strand, 46769773 - 46769964
Alignment:
| Q |
68 |
atttaataattgttttgttttataactctt---ctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttccttattcat |
164 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||||| |||||| ||||||||| ||||||||||| ||||||||| | ||||||||||| |
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| T |
46769773 |
atttaataattattttgttttataactcttcttctgtttgtttggaagcatgtggatgtcactagtacatttatgccttttagtccatatccttattcat |
46769872 |
T |
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| Q |
165 |
ttctttacatgccatctctct-----tctaatttttcatccaattcaaccattcaac-tttcagtttttccttgtttcttttatgtaattgt |
250 |
Q |
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||||||| ||| ||||||| | | ||||||| |||||||||||| |||||||| ||||||||||||||| |||||| |||||||||| |
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| T |
46769873 |
ttctttatatgtcatctctattttaatttaattttacatccaattcaatcattcaacttttcagtttttccttctttcttcaatgtaattgt |
46769964 |
T |
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