View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14003_low_17 (Length: 306)
Name: NF14003_low_17
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14003_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 267
Target Start/End: Complemental strand, 48155827 - 48155574
Alignment:
| Q |
13 |
aatattgccaaattcggtgatataaatttcgttgcaatgaagacaacaacacttttgaaaaccatctgaaaatccaccgaaccaagttgcagatcgaaaa |
112 |
Q |
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| T |
48155827 |
aatattgccaaattcggtgttataaattttgttgcaatgaagacaacaacacttttgaaaaccatctgaaaatccactgaaccaagttgcagatcgaaaa |
48155728 |
T |
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| Q |
113 |
tccatcgcatagcctgaaaaaaggccagtagcttctctgacattcgatcttgacaaatgcaaaatgaccgaccattcttgtctctaataagaatatcaat |
212 |
Q |
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| T |
48155727 |
tccatcgcatagcctgaaaaaaggccagtagcttctctgacattcgatcttgacaaatgtaaaat----gaccattcttgtctctaataagaatatcaat |
48155632 |
T |
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| Q |
213 |
ctccacacagactaactgagaagaaaa---gacatcaatattgtatttgtatctactt |
267 |
Q |
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| T |
48155631 |
ctccacacagactaactgatcagaaaaagtggcatcaatattacatttgtatctactt |
48155574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 204 - 292
Target Start/End: Complemental strand, 48155515 - 48155427
Alignment:
| Q |
204 |
aatatcaatctccacacagactaactgagaagaaaagacatcaatattgtatttgtatctacttggggatggctattacgaagtttgtg |
292 |
Q |
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| T |
48155515 |
aatatcactctccacatagtttgactgaaaagaaaagacatcaatattgtatttgtatctacttggggatggctattacaaattttgtg |
48155427 |
T |
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