View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14003_low_18 (Length: 279)
Name: NF14003_low_18
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14003_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 48001432 - 48001692
Alignment:
| Q |
14 |
gagatgaattagaaaacttgttggatgatgatggagatatggctgagctatatttgacagataagttggctcaaaagaagtttgaaaattcttctacttt |
113 |
Q |
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| T |
48001432 |
gagatgaattagaaaacttgttggatgatgatggagatatggctgagctatatttgacagataagttggctcaaaagaagtttgaaaattcttctacttt |
48001531 |
T |
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| Q |
114 |
ttcatccatgaataataacggggatgacatgatgatgaaccgggttcttcaaccaaatatagttgacaggtatttcatttcatttcattgtgaatttgat |
213 |
Q |
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| T |
48001532 |
ttcatccatgaataataacggggatgacatgatgatgaaccgggttcttcaaccaaatatagttgacaggt-----atttcatttcattgtgaatttgat |
48001626 |
T |
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| Q |
214 |
ctgatatggacatgtcttaccataacaaatattttatgtcgtacaatataattaattcttcattat |
279 |
Q |
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| T |
48001627 |
ctgatatggacatgtcttaccataacaaatattttatgtcgtacaatataattaattcttcattat |
48001692 |
T |
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