View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14003_low_2 (Length: 580)

Name: NF14003_low_2
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14003_low_2
NF14003_low_2
[»] chr4 (13 HSPs)
chr4 (11-565)||(7057041-7057594)
chr4 (11-354)||(7048202-7048527)
chr4 (9-187)||(7041081-7041262)
chr4 (378-563)||(7048519-7048698)
chr4 (9-125)||(7028633-7028749)
chr4 (13-125)||(7021900-7022012)
chr4 (267-434)||(7041379-7041546)
chr4 (11-125)||(7015012-7015126)
chr4 (11-125)||(6995598-6995712)
chr4 (11-125)||(7005220-7005334)
chr4 (265-431)||(43804375-43804541)
chr4 (388-431)||(24188003-24188046)
chr4 (490-534)||(54521808-54521854)
[»] chr3 (2 HSPs)
chr3 (312-375)||(20363630-20363697)
chr3 (482-534)||(32471605-32471657)
[»] chr2 (1 HSPs)
chr2 (346-390)||(10931719-10931763)
[»] chr7 (2 HSPs)
chr7 (490-534)||(20553897-20553943)
chr7 (266-300)||(42954995-42955029)
[»] chr5 (2 HSPs)
chr5 (269-408)||(18900532-18900669)
chr5 (490-546)||(32117752-32117810)


Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 11 - 565
Target Start/End: Original strand, 7057041 - 7057594
Alignment:
Q  11 cataggaaaatgggaacgatgttaccgtactgattttgagcgtgagatctttagtagcgttgagtttcatgcaaatctaagcaaaaaaggataccgctct 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7057041 cataggaaaatgggaacgatgttaccgtactgattttgagcgtgagatttttagtagcgttgagtttcatgcaaatctaagcaaaaaaggataccgctct 7057140  T
Q  111 ttgatatacaggtga----tttctccttctaatgtaatgtttatttcttttaaaactggtgttgttagcatataggtagtggttttcttggataataaaa 206  Q
    |||||||||||||||    |||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  7057141 ttgatatacaggtgaagattttctctttctaatgtagtgtttatttcttttaaaaccggtgttgttagcatataggtagtggttttcttagataataaaa 7057240  T
Q  207 tcatatttcaagacactcatgagcatcaatatcatacgagtaggtagtggttttcttgcaatacatgtgagttgtatctcgattcgatacaaaattaagt 306  Q
    |||||||||||     ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7057241 tcatatttcaa-----tcatgagcatcaatatcatacgagtaggtagtggttttcttgcgatacatgtgagttgtatctcgattcgatacaaaattaagt 7057335  T
Q  307 ccagccaatacaaacctctagtttatatctattttaaatatgaatctcatcttgagtcccgatacattaagatgaatctcgattcacaacgatgaattct 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7057336 ccagccaatacaaacctctagtttatatctattttaaatatgaatctcatcttgagtcccgatacattaagatgaatctcgattcacaacgatgaattct 7057435  T
Q  407 gaatcgttcttatgaatcactacctgatttttgtgtagctaaccacttcttttttgtcaactttatataactaactagctaagcacttttcttttgtcat 506  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7057436 gaatcgttcttatgaatcactaactgacttttgtgtagctaaccactttttttttgtcaactttatataactaactaactaagcacttttcttttgtcat 7057535  T
Q  507 ttgatttgacttaaatcttgaattatttagattagtagattatatattcggttataatt 565  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7057536 ttgatttgacttaaatcttgaattatttagattagtagataatatattcggttataatt 7057594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 7048202 - 7048527
Alignment:
Q  11 cataggaaaatgggaacgatgttaccgtactgattttgagcgtgagatctttagtagcgttgagtttcatgcaaatctaagcaaaaaaggataccgctct 110  Q
    |||||||| ||||||||||||||||  |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7048202 cataggaacatgggaacgatgttacactactgattttaagcgtgagatctttagtaccgttgagtttcatgcaaatctaagcaaaaaaggataccgctct 7048301  T
Q  111 ttgatatacaggtga----tttctccttctaatgtaatgtttatttcttttaaaactggtgttgttagcatataggtagtggttttcttggataataaaa 206  Q
    |||||||||||||||    |||||| ||||||||||  |||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||     
T  7048302 ttgatatacaggtgaagattttctctttctaatgtagagtttatttcttttaaaaccggtgttgttagcatataggtagtgtttttcttagataataaac 7048401  T
Q  207 tcatatttcaagacactcatgagcatcaatatcatacgagtaggtagtggttttcttgcaatacatgtgagttgtatctcgattcgatacaaaattaagt 306  Q
    ||||||||||| |||||||||| |||||||||||||                      |||||||||||| || ||||| ||||||||||||||||||||    
T  7048402 tcatatttcaatacactcatgaacatcaatatcata----------------------caatacatgtgaattatatctagattcgatacaaaattaagt 7048479  T
Q  307 ccagccaatacaaacctctagtttatatctattttaaatatgaatctc 354  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||    
T  7048480 ccggccaatacaaacctctagtttatatcaattttaaatatgaatctc 7048527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 7041081 - 7041262
Alignment:
Q  9 agcataggaaaatgggaacgatgttaccgtactgattttgagcgtgagatctttagtagcgttgagtttcatgcaaatctaagcaaaaaaggataccgct 108  Q
    |||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7041081 agcatagggaaatgggaacgatgttacactactgattttgagcgtgagatctttagtagcgttgagtttcatgcaaatctaagcaaaaaaggatatcgct 7041180  T
Q  109 ctttgatatacaggtga----tttctccttctaatgtaatgtttatttcttttaaaactggtgttgttagcatataggtagtg 187  Q
    |||||||||||||||||    |||||| || |||||||  ||||||||||||| |||| |||||||||| |||||| ||||||    
T  7041181 ctttgatatacaggtgaatattttctctttataatgtagagtttatttctttt-aaaccggtgttgttaccatatatgtagtg 7041262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 378 - 563
Target Start/End: Original strand, 7048519 - 7048698
Alignment:
Q  378 atgaatctcgattcacaacgatgaattctgaatcgttcttatgaatcactacctgatttttgtgtagctaaccacttcttttttgtcaactttatataac 477  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  7048519 atgaatctcgattcactacgatgaattccaaatcgttcttatgaatcactacctgatctttgtgtagctaaccacttcttttttgtcaactttatataa- 7048617  T
Q  478 taactagctaagcacttttcttttgtcatttgatttgacttaaatcttgaattattt--agattagtagattatatattcggttataa 563  Q
           |||||| | |||||||||||||||||||||||||||||||||||||||||  || ||||||||| ||||||| ||||||||    
T  7048618 -------ctaagctcctttcttttgtcatttgatttgacttaaatcttgaattattttgaggttagtagatgatatattgggttataa 7048698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 7028633 - 7028749
Alignment:
Q  9 agcataggaaaatgggaacgatgttaccgtactgattttgagcgtgagatctttagtagcgttgagtttcatgcaaatctaagcaaaaaaggataccgct 108  Q
    |||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  7028633 agcatagggaaatgggaacgatgttacactactgattttgagcgtgagatctttagtagcgttgagtttcatgtgaatctaagcaaaaaaggataccgct 7028732  T
Q  109 ctttgatatacaggtga 125  Q
    |||||||||||||||||    
T  7028733 ctttgatatacaggtga 7028749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 7021900 - 7022012
Alignment:
Q  13 taggaaaatgggaacgatgttaccgtactgattttgagcgtgagatctttagtagcgttgagtttcatgcaaatctaagcaaaaaaggataccgctcttt 112  Q
    ||||||||||| | || ||||||  |||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7021900 taggaaaatggtatcgttgttacaatactgattttgagaaggagatctttagcagcgttgagtttcatgcaaatctaagcaaaaaaggataccgctcttt 7021999  T
Q  113 gatatacaggtga 125  Q
    |||||||||||||    
T  7022000 gatatacaggtga 7022012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 267 - 434
Target Start/End: Original strand, 7041379 - 7041546
Alignment:
Q  267 atacatgtgagttgtatctcgattcgatacaaaattaagtccagccaatacaaacctctagtttatatctattttaaatatgaatctcatcttgagtccc 366  Q
    |||||||| ||| |||| |||||| |||||| |||||| | ||||||| |  ||||||||||||||| ||| ||| ||||||||| ||||||||| ||||    
T  7041379 atacatgtcagtcgtatttcgatttgatacataattaaattcagccaagatgaacctctagtttatacctacttttaatatgaatttcatcttgactccc 7041478  T
Q  367 gatacattaagatgaatctcgattcacaacgatgaattctgaatcgttcttatgaatcactacctgat 434  Q
    |||| |||||||||||||||||||||| | ||||||||  || || |||||||||||||||| |||||    
T  7041479 gatatattaagatgaatctcgattcactatgatgaattgcgattctttcttatgaatcactatctgat 7041546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 7015012 - 7015126
Alignment:
Q  11 cataggaaaatgggaacgatgttaccgtactgattttgagcgtgagatctttagtagcgttgagtttcatgcaaatctaagcaaaaaaggataccgctct 110  Q
    |||||| ||||||||||| ||||||   | ||||||||||  ||| || ||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  7015012 catagggaaatgggaacgttgttacatgaatgattttgagtatgatatatttggtagcgttgagtttcatgcaaatctaagcaaaaaaggataccgttct 7015111  T
Q  111 ttgatatacaggtga 125  Q
    |||||||||||||||    
T  7015112 ttgatatacaggtga 7015126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 6995598 - 6995712
Alignment:
Q  11 cataggaaaatgggaacgatgttaccgtactgattttgagcgtgagatctttagtagcgttgagtttcatgcaaatctaagcaaaaaaggataccgctct 110  Q
    |||||| ||||||||||| ||||||  || ||||||||||  ||||||| || ||||| |||||||||||| |||||||||||||||||||||||| |||    
T  6995598 catagggaaatgggaacgttgttactctaatgattttgagaatgagatccttggtagctttgagtttcatgtaaatctaagcaaaaaaggataccggtct 6995697  T
Q  111 ttgatatacaggtga 125  Q
    ||||| |||||||||    
T  6995698 ttgatttacaggtga 6995712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 7005220 - 7005334
Alignment:
Q  11 cataggaaaatgggaacgatgttaccgtactgattttgagcgtgagatctttagtagcgttgagtttcatgcaaatctaagcaaaaaaggataccgctct 110  Q
    |||||| ||||||||||| ||||||   | ||||||||||  ||| || ||| ||||| ||||||||||||||||||||||||||||||||||||| |||    
T  7005220 catagggaaatgggaacgttgttacatgaatgattttgagtatgatatatttggtagctttgagtttcatgcaaatctaagcaaaaaaggataccgttct 7005319  T
Q  111 ttgatatacaggtga 125  Q
    |||||||||||||||    
T  7005320 ttgatatacaggtga 7005334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 431
Target Start/End: Original strand, 43804375 - 43804541
Alignment:
Q  265 caatacatgtgagttgtatctcgattcgatacaaaatt-aagtccagccaatacaaacctctagtttatatctattttaaatatgaatctcatcttgagt 363  Q
    ||||||||||||||||| ||||||| || ||||||| | || ||||   ||||  || ||||||||| |||||||||| || |||||||||||||| | |    
T  43804375 caatacatgtgagttgtctctcgatccgttacaaaaatgaactccaat-aatatgaatctctagtttgtatctattttgaacatgaatctcatcttaaat 43804473  T
Q  364 cccgatacattaagatgaatctcgattcacaacgatgaattctgaatcgttcttatgaatcactacct 431  Q
    |  ||| || |  ||||||||| ||||||  | |||||||||||| || |||| |||||||| |||||    
T  43804474 catgatccactttgatgaatcttgattcattaggatgaattctgattcattctaatgaatcattacct 43804541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 431
Target Start/End: Original strand, 24188003 - 24188046
Alignment:
Q  388 attcacaacgatgaattctgaatcgttcttatgaatcactacct 431  Q
    |||||| || ||||||||||| ||||||||||||||||||||||    
T  24188003 attcaccacaatgaattctgattcgttcttatgaatcactacct 24188046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 534
Target Start/End: Complemental strand, 54521854 - 54521808
Alignment:
Q  490 cacttttcttttgtcatttg--atttgacttaaatcttgaattattt 534  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||||    
T  54521854 cacttttcttttgtcatttgatatttgacttaaatcttgatttattt 54521808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 20363697 - 20363630
Alignment:
Q  312 caatacaaacctctagtttatatctatttt----aaatatgaatctcatcttgagtcccgatacatta 375  Q
    ||||||||||||||||||| || | |||||    | ||||||||||||||||||||||||||||||||    
T  20363697 caatacaaacctctagtttgtaccgattttgaacatatatgaatctcatcttgagtcccgatacatta 20363630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 534
Target Start/End: Original strand, 32471605 - 32471657
Alignment:
Q  482 tagctaagcacttttcttttgtcatttgatttgacttaaatcttgaattattt 534  Q
    ||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||    
T  32471605 tagctaaccacttttattttgtcattatatttgacttgaatcttgaattattt 32471657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 10931763 - 10931719
Alignment:
Q  346 atgaatctcatcttgagtcccgatacattaagatgaatctcgatt 390  Q
    |||||||||||||||| | || |||||||||||||||||||||||    
T  10931763 atgaatctcatcttgaattccaatacattaagatgaatctcgatt 10931719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 534
Target Start/End: Complemental strand, 20553943 - 20553897
Alignment:
Q  490 cacttttcttttgtcatttgatt--tgacttaaatcttgaattattt 534  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||||    
T  20553943 cacttttcttttgtcatttgatttatgacttaaatcttcaattattt 20553897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 42954995 - 42955029
Alignment:
Q  266 aatacatgtgagttgtatctcgattcgatacaaaa 300  Q
    |||||||||||||||||| ||||||||||||||||    
T  42954995 aatacatgtgagttgtatttcgattcgatacaaaa 42955029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 408
Target Start/End: Original strand, 18900532 - 18900669
Alignment:
Q  269 acatgtgagttgtatctcgattcgatacaaaattaagtccagccaatacaaacctctagtttatatctattttaaatatgaatctcatcttgagtcccga 368  Q
    ||||| |||||||||||||||| ||| | ||||| || |||  | |||  || ||||||| | ||||||||| ||  |||||||||||||| | ||  ||    
T  18900532 acatgcgagttgtatctcgatttgatgctaaattgagcccaatcgatatgaatctctagtgtgtatctatttcaac-atgaatctcatctttaatcgtga 18900630  T
Q  369 tacattaagatgaatctcgattcacaacgatgaattctga 408  Q
    | ||||| ||||||||||||||||| | ||||||||||||    
T  18900631 t-cattatgatgaatctcgattcactatgatgaattctga 18900669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 546
Target Start/End: Original strand, 32117752 - 32117810
Alignment:
Q  490 cacttttcttttgtcatttgatt--tgacttaaatcttgaattatttagattagtagat 546  Q
    |||||||||||||||||||||||  |||||| |||||||||| ||| || |||||||||    
T  32117752 cacttttcttttgtcatttgatttatgacttgaatcttgaatcattgaggttagtagat 32117810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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