View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14003_low_21 (Length: 245)
Name: NF14003_low_21
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14003_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 40121219 - 40120975
Alignment:
| Q |
1 |
tttttatacttaatgttatgttgagatatacatttaggtata----gatatgacgaatattaatgttgtaagtgtatgggcaataaatatgaggacaata |
96 |
Q |
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| T |
40121219 |
tttttatacttaatgttatgttgagatatacatttaggtatatatagatatgacgaatattaatgttgtaagtgtatgggcaataaatatgaggacaata |
40121120 |
T |
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| Q |
97 |
ataattgatgagtgtggaattgaatttcaaagaaggctaacgacctaagtgtgtgaggcagctgaggaatgagaagaaattggaacctttcttttgtgtt |
196 |
Q |
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| T |
40121119 |
ataattgatgagtgtggaattgaatttcaacaaaggctaacgacctaagtgtgtgaggcagctgaggaatgagaagaaattggaacctttcttttgtgtt |
40121020 |
T |
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| Q |
197 |
tgaccgtctgctaatcgcgatatatacatgtaacggcagaataat |
241 |
Q |
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| T |
40121019 |
tgaccgtctgctaatcgcgatatatacatgtaacggcaaaataat |
40120975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 207
Target Start/End: Complemental strand, 40124835 - 40124703
Alignment:
| Q |
70 |
gtatgggcaataaatatgaggacaataa-taattgatgagtgtggaattgaatttcaaagaaggctaacgacctaagtgtgtgaggcagctgaggaatga |
168 |
Q |
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| T |
40124835 |
gtatgagcaataaatatgaaggaaataaataattcaagagtgtggagttgaatttcaacaaaggctaacgacctaaat------agaatatgaggaatta |
40124742 |
T |
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| Q |
169 |
gaagaaattggaacctttcttttgtgt-ttgaccgtctgc |
207 |
Q |
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| T |
40124741 |
gaagaaattggaacctttctttt-tgtcttgaccgtctgc |
40124703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 40092306 - 40092254
Alignment:
| Q |
95 |
taataattgatgagtgtggaattgaatttcaaagaaggctaacgacctaagtg |
147 |
Q |
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| T |
40092306 |
taataattgaagattgtggaattaaatttcaattaaggctgacgacctaagtg |
40092254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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