View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14003_low_22 (Length: 245)

Name: NF14003_low_22
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14003_low_22
NF14003_low_22
[»] chr8 (11 HSPs)
chr8 (1-115)||(33801499-33801613)
chr8 (1-115)||(38686303-38686417)
chr8 (1-116)||(33802307-33802422)
chr8 (1-107)||(38686989-38687095)
chr8 (7-71)||(15183788-15183852)
chr8 (39-107)||(32551080-32551148)
chr8 (1-61)||(39257688-39257748)
chr8 (9-58)||(12350024-12350073)
chr8 (12-61)||(43971332-43971381)
chr8 (9-61)||(12350596-12350648)
chr8 (9-80)||(43972028-43972099)
[»] chr4 (8 HSPs)
chr4 (1-117)||(53665020-53665136)
chr4 (1-103)||(50710351-50710453)
chr4 (1-107)||(53664220-53664326)
chr4 (1-68)||(50709706-50709773)
chr4 (63-117)||(20681720-20681774)
chr4 (12-76)||(6246823-6246887)
chr4 (11-81)||(6680286-6680356)
chr4 (9-61)||(10420971-10421023)
[»] chr2 (11 HSPs)
chr2 (1-117)||(8536820-8536936)
chr2 (1-97)||(8536155-8536251)
chr2 (6-76)||(42369682-42369752)
chr2 (1-76)||(42370884-42370959)
chr2 (12-85)||(4993634-4993707)
chr2 (12-76)||(4975735-4975799)
chr2 (6-80)||(4976444-4976518)
chr2 (6-80)||(4994351-4994425)
chr2 (1-61)||(41519859-41519919)
chr2 (83-116)||(26893481-26893514)
chr2 (83-116)||(26898920-26898953)
[»] chr5 (4 HSPs)
chr5 (116-230)||(605049-605151)
chr5 (9-61)||(4554711-4554763)
chr5 (66-116)||(43589161-43589211)
chr5 (67-116)||(42993200-42993249)
[»] chr7 (3 HSPs)
chr7 (8-71)||(46757468-46757531)
chr7 (67-115)||(34852557-34852605)
chr7 (12-76)||(12732286-12732350)
[»] chr1 (8 HSPs)
chr1 (9-85)||(11469707-11469783)
chr1 (9-61)||(11469135-11469187)
chr1 (9-61)||(14925284-14925336)
chr1 (12-76)||(31787517-31787581)
chr1 (11-115)||(38618230-38618334)
chr1 (67-115)||(51976264-51976312)
chr1 (9-61)||(14924728-14924780)
chr1 (67-115)||(24976719-24976767)
[»] scaffold0189 (1 HSPs)
scaffold0189 (9-76)||(12801-12868)
[»] chr3 (1 HSPs)
chr3 (67-115)||(35432221-35432269)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 33801613 - 33801499
Alignment:
Q  1 aaaatatttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccatagtgaaaaagaattccttctaccc 100  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||    
T  33801613 aaaagatttggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaatatttacttttccatggtgggaaagaattccttctaccc 33801514  T
Q  101 accctaagtgccacc 115  Q
    ||||||| |||||||    
T  33801513 accctaaatgccacc 33801499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 38686417 - 38686303
Alignment:
Q  1 aaaatatttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccatagtgaaaaagaattccttctaccc 100  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||| ||| |||||||||||||||||||    
T  38686417 aaaagatttggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaatatttactttcccatggtggaaaagaattccttctaccc 38686318  T
Q  101 accctaagtgccacc 115  Q
    ||||||| |||||||    
T  38686317 accctaaatgccacc 38686303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 33802307 - 33802422
Alignment:
Q  1 aaaatatttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccatagtgaaaaagaattccttctaccc 100  Q
    |||| ||||| ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||| |||  ||||||||||||||||||    
T  33802307 aaaagatttgatgttgagtgtctatgataaaaccatgttctctattttatttaatggtcaatatttactttcccatggtgggaaagaattccttctaccc 33802406  T
Q  101 accctaagtgccacct 116  Q
    ||||||| ||||||||    
T  33802407 accctaaatgccacct 33802422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 38686989 - 38687095
Alignment:
Q  1 aaaatatttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccatagtgaaaaagaattccttctaccc 100  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |||| |||  ||||||||||||||||||    
T  38686989 aaaatatttgatgttgagtgtctatgataaaatcatgttctctactttatctaatgatcaatatttactttcccattgtgggaaagaattccttctaccc 38687088  T
Q  101 accctaa 107  Q
    |||||||    
T  38687089 accctaa 38687095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 15183788 - 15183852
Alignment:
Q  7 tttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttt 71  Q
    |||||| |||||||||| |||||||||||| || |||||||||| |||||||||| ||| |||||    
T  15183788 tttggttttgagtgtctgtgataaaatcatgttttctactttatctaatggtcaaaattaacttt 15183852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 32551080 - 32551148
Alignment:
Q  39 tctctactttatttaatggtcaatatttacttttccatagtgaaaaagaattccttctacccaccctaa 107  Q
    |||||| ||||| |||||||||||||||||||| | ||  ||  |||||||||||||||||||||||||    
T  32551080 tctctagtttatctaatggtcaatatttactttcctatgatgggaaagaattccttctacccaccctaa 32551148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 39257748 - 39257688
Alignment:
Q  1 aaaatatttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaa 61  Q
    |||| ||||| |||||||| ||||||||||||  || ||||||||||||||||||||||||    
T  39257748 aaaaaatttgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaa 39257688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 12350073 - 12350024
Alignment:
Q  9 tggtgttgagtgtctatgataaaatcatattctctactttatttaatggt 58  Q
    |||||||||||||||||||||||| ||| |||| |||||||| |||||||    
T  12350073 tggtgttgagtgtctatgataaaagcatgttctttactttatctaatggt 12350024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 43971381 - 43971332
Alignment:
Q  12 tgttgagtgtctatgataaaatcatattctctactttatttaatggtcaa 61  Q
    |||||||| ||||||||||||  || ||||||||||||||||||||||||    
T  43971381 tgttgagtctctatgataaaagtatgttctctactttatttaatggtcaa 43971332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 12350596 - 12350648
Alignment:
Q  9 tggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaa 61  Q
    ||||||||||||||||||||||||  || |||||||| |||| ||||||||||    
T  12350596 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaa 12350648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 43972028 - 43972099
Alignment:
Q  9 tggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccatagtg 80  Q
    |||||||||||||||||| |||||  || ||||||| ||||| ||||||| || ||| ||||| ||||||||    
T  43972028 tggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtg 43972099  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 53665020 - 53665136
Alignment:
Q  1 aaaatatttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccatagtgaaaaagaattccttctaccc 100  Q
    |||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||  || |||  ||||||||||||||||||    
T  53665020 aaaagatttggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaatatttacttttttatggtgggaaagaattccttctaccc 53665119  T
Q  101 accctaagtgccaccta 117  Q
    ||||||| |||||||||    
T  53665120 accctaaatgccaccta 53665136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 50710351 - 50710453
Alignment:
Q  1 aaaatatttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccatagtgaaaaagaattccttctaccc 100  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||| |||| |||  ||||||||||||||||||    
T  50710351 aaaatatttggtgttgagtgtctatgataaattcatgttctctactttatctaatggtcaatatttactttcccatggtgggaaagaattccttctaccc 50710450  T
Q  101 acc 103  Q
    |||    
T  50710451 acc 50710453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 53664326 - 53664220
Alignment:
Q  1 aaaatatttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccatagtgaaaaagaattccttctaccc 100  Q
    |||| ||||| ||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||||||| |||| |||  ||||||||||||||||||    
T  53664326 aaaagatttgatgttgagtgtctatgataaaaccatgttctctattttatctaatggtcaatatttactttcccatggtgggaaagaattccttctaccc 53664227  T
Q  101 accctaa 107  Q
    |||||||    
T  53664226 accctaa 53664220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 50709773 - 50709706
Alignment:
Q  1 aaaatatttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttac 68  Q
    |||| |||||||||||||||||||||||||||  || ||||||||||||| |||| ||||||||||||    
T  50709773 aaaagatttggtgttgagtgtctatgataaaactatgttctctactttatctaatagtcaatatttac 50709706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 20681774 - 20681720
Alignment:
Q  63 atttacttttccatagtgaaaaagaattccttctacccaccctaagtgccaccta 117  Q
    ||||||||| ||||||||  ||||||||||| ||||||||||||| |||||||||    
T  20681774 atttactttcccatagtgggaaagaattcctcctacccaccctaaatgccaccta 20681720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 6246887 - 6246823
Alignment:
Q  12 tgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccat 76  Q
    |||||||||||||||||||||  || |||||||| |||| |||||||||| ||| ||||| ||||    
T  6246887 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaactttcccat 6246823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 6680286 - 6680356
Alignment:
Q  11 gtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccatagtga 81  Q
    ||||||||  ||||||||||||  || |||| ||||| || |||||||||||||||||||| |||| ||||    
T  6680286 gtgttgagaatctatgataaaactatgttctttacttaatctaatggtcaatatttactttcccatggtga 6680356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 10421023 - 10420971
Alignment:
Q  9 tggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaa 61  Q
    ||||||||||||||||||||||||  || || |||| ||||| ||||||||||    
T  10421023 tggtgttgagtgtctatgataaaagtatgttatctagtttatctaatggtcaa 10420971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 8536820 - 8536936
Alignment:
Q  1 aaaatatttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccatagtgaaaaagaattccttctaccc 100  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||||||||||| ||   ||||||||||||||||||    
T  8536820 aaaagatttggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaacatttacttttccatggtaggaaagaattccttctaccc 8536919  T
Q  101 accctaagtgccaccta 117  Q
    ||||||| |||||||||    
T  8536920 accctaaatgccaccta 8536936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 8536251 - 8536155
Alignment:
Q  1 aaaatatttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccatagtgaaaaagaattccttcta 97  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| |||| ||| ||||||||||||||||    
T  8536251 aaaatatttgatgttgagtgtctatgataaaatcatgttctctactttatctaatcgtcaatatttactttcccatggtggaaaagaattccttcta 8536155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 42369752 - 42369682
Alignment:
Q  6 atttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccat 76  Q
    |||||||||||||||||||||||||||| || ||||||||||||| ||||||  |||||||||||| ||||    
T  42369752 atttggtgttgagtgtctatgataaaattatgttctctactttatctaatggctaatatttactttcccat 42369682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 42370884 - 42370959
Alignment:
Q  1 aaaatatttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccat 76  Q
    |||| ||||||||| |||||||||||||||||  |||||||| ||||||| |||||| ||||||||||||| ||||    
T  42370884 aaaaaatttggtgtcgagtgtctatgataaaactatattctccactttatctaatggccaatatttactttcccat 42370959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 4993707 - 4993634
Alignment:
Q  12 tgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccatagtgaaaaa 85  Q
    |||||||| ||||||||||||  || |||||||||||||||||||||||| |||  ||||||||| ||| ||||    
T  4993707 tgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtggaaaa 4993634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 4975799 - 4975735
Alignment:
Q  12 tgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccat 76  Q
    |||||||| ||||||||||||  || |||||||||||||||||||||||| |||  |||||||||    
T  4975799 tgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccat 4975735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 4976444 - 4976518
Alignment:
Q  6 atttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccatagtg 80  Q
    ||||||||||||||||||||| |||||  || ||||||| ||||| ||||||| || ||| ||||| ||||||||    
T  4976444 atttggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtg 4976518  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 4994351 - 4994425
Alignment:
Q  6 atttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccatagtg 80  Q
    ||||||||||||||||||||| |||||  || ||||||| ||||| ||||||| || ||| ||||| ||||||||    
T  4994351 atttggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtg 4994425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 41519859 - 41519919
Alignment:
Q  1 aaaatatttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaa 61  Q
    |||| ||||||||||| ||||||||| |||||  || ||||||||||||||||| ||||||    
T  41519859 aaaaaatttggtgttgggtgtctatggtaaaagtatgttctctactttatttaacggtcaa 41519919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 26893514 - 26893481
Alignment:
Q  83 aaagaattccttctacccaccctaagtgccacct 116  Q
    ||||||||||||||||||||||||| ||||||||    
T  26893514 aaagaattccttctacccaccctaaatgccacct 26893481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 26898953 - 26898920
Alignment:
Q  83 aaagaattccttctacccaccctaagtgccacct 116  Q
    ||||||||||||||||||||||||| ||||||||    
T  26898953 aaagaattccttctacccaccctaaatgccacct 26898920  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 605151 - 605049
Alignment:
Q  116 taaattattggtacctcagaggaacacaacaattgctttttcccaatttacttcttctgataggacgtattgtttctttgtaagagaaaatcgcagcgat 215  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||            |||| |||||||||||||||||||||||||||||||||    
T  605151 taaattattggtacctcagaagaacacaacaattgctttttcccaattta------------ggacatattgtttctttgtaagagaaaatcgcagcgat 605064  T
Q  216 gggattggtgtggag 230  Q
    |||||||||||||||    
T  605063 gggattggtgtggag 605049  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 4554763 - 4554711
Alignment:
Q  9 tggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaa 61  Q
    ||||||||||||||||||||||||  || ||||||||||||| ||||||||||    
T  4554763 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaa 4554711  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 43589161 - 43589211
Alignment:
Q  66 tacttttccatagtgaaaaagaattccttctacccaccctaagtgccacct 116  Q
    |||||| ||||||||  ||||||||||| ||||||||||||| ||||||||    
T  43589161 tactttcccatagtgggaaagaattcctcctacccaccctaaatgccacct 43589211  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 42993200 - 42993249
Alignment:
Q  67 acttttccatagtgaaaaagaattccttctacccaccctaagtgccacct 116  Q
    |||||||||| |||  | ||||||||||||||||||||||| ||||||||    
T  42993200 acttttccatggtgggatagaattccttctacccaccctaaatgccacct 42993249  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 46757531 - 46757468
Alignment:
Q  8 ttggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttt 71  Q
    |||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||    
T  46757531 ttggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttacttt 46757468  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 34852605 - 34852557
Alignment:
Q  67 acttttccatagtgaaaaagaattccttctacccaccctaagtgccacc 115  Q
    ||||| |||| ||| |||||||||||||||||||||||||| |||||||    
T  34852605 actttcccatggtggaaaagaattccttctacccaccctaaatgccacc 34852557  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 12732350 - 12732286
Alignment:
Q  12 tgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccat 76  Q
    ||||||| |||||||||||||  || |||| ||| | || |||||||||||||||||||| ||||    
T  12732350 tgttgagagtctatgataaaactatgttctttacatgatctaatggtcaatatttactttcccat 12732286  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 11469707 - 11469783
Alignment:
Q  9 tggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccatagtgaaaaa 85  Q
    ||||||||| ||||||||||||||  || ||||||||||||| |||||||||| |||   |||||||| ||||||||    
T  11469707 tggtgttgaatgtctatgataaaagtatgttctctactttatctaatggtcaaaattagtttttccatggtgaaaaa 11469783  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 11469187 - 11469135
Alignment:
Q  9 tggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaa 61  Q
    ||||||||||||||||||||||||  || |||||||| |||| ||||||||||    
T  11469187 tggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaa 11469135  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 14925284 - 14925336
Alignment:
Q  9 tggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaa 61  Q
    ||||||||||||||||||||||||  || ||||||| ||||| ||||||||||    
T  14925284 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaa 14925336  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 31787581 - 31787517
Alignment:
Q  12 tgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccat 76  Q
    |||||||| ||||||||||||  || ||||||||||||| |||||||||| |||  |||||||||    
T  31787581 tgttgagtctctatgataaaagtatgttctctactttatctaatggtcaaaattagcttttccat 31787517  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 38618334 - 38618230
Alignment:
Q  11 gtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccatagtgaaaaagaattccttctacccaccctaagtg 110  Q
    |||||||| ||||||||||| |   | ||| |||||| || ||||||||||  || ||||| |||| |||  ||||||||||| ||||||||||||| ||    
T  38618334 gtgttgagagtctatgataagaatgtgttcactacttaatctaatggtcaaacttaactttcccatggtgggaaagaattcctcctacccaccctaaatg 38618235  T
Q  111 ccacc 115  Q
    |||||    
T  38618234 ccacc 38618230  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 51976312 - 51976264
Alignment:
Q  67 acttttccatagtgaaaaagaattccttctacccaccctaagtgccacc 115  Q
    |||||||||| ||| |||||||||||| ||||||||||||| |||||||    
T  51976312 acttttccatggtggaaaagaattcctcctacccaccctaaatgccacc 51976264  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 14924780 - 14924728
Alignment:
Q  9 tggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaa 61  Q
    ||||||||||||||||||||||||  || ||||||| || |||||| ||||||    
T  14924780 tggtgttgagtgtctatgataaaaatatgttctctatttaatttaacggtcaa 14924728  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 24976719 - 24976767
Alignment:
Q  67 acttttccatagtgaaaaagaattccttctacccaccctaagtgccacc 115  Q
    ||||| |||| ||| |||||||||||| ||||||||||||| |||||||    
T  24976719 actttcccatggtggaaaagaattcctcctacccaccctaaatgccacc 24976767  T

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Target: scaffold0189 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 12801 - 12868
Alignment:
Q  9 tggtgttgagtgtctatgataaaatcatattctctactttatttaatggtcaatatttacttttccat 76  Q
    ||||||||||||||||||||||||  || ||||||| ||||| |||||||||| ||| ||||| ||||    
T  12801 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattaactttcccat 12868  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 35432221 - 35432269
Alignment:
Q  67 acttttccatagtgaaaaagaattccttctacccaccctaagtgccacc 115  Q
    |||||||||| |||  ||||||||||||||||||||||||| |||||||    
T  35432221 acttttccatggtgggaaagaattccttctacccaccctaaatgccacc 35432269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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