View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14003_low_23 (Length: 239)
Name: NF14003_low_23
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14003_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40121337 - 40121558
Alignment:
| Q |
1 |
tacatatccaaaaacactaagaaaccaaagggatcaatgaaaaatgaatacccttttgaatccaaatattcttggcttcactcagtaagaaagtcaccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40121337 |
tacatatccaaaaacactaagaaaccaaagggatcaatgaaaaatgaatacccttttgaatccaaatattcttgtcttcactcagtaagaaagtcaccaa |
40121436 |
T |
|
| Q |
101 |
caaagacatggaataagaaggcaccaatagcaccaatggcaccaacacctatcaaagtatacaaagtggatcctataaacttcaaagaacttgttcagtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40121437 |
caaagacatggaataagaaggcaccaatagcaccaatggcaccaacacctatcaaagtatacaaagtggatccaataaacttcaaagaacttgttcagtc |
40121536 |
T |
|
| Q |
201 |
cctcacttgtgcacctcagttc |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
40121537 |
cctcacttgtgcacctcagttc |
40121558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40092514 - 40092735
Alignment:
| Q |
1 |
tacatatccaaaaacactaagaaaccaaagggatcaatgaaaaatgaatacccttttgaatccaaatattcttggcttcactcagtaagaaagtcaccaa |
100 |
Q |
| |
|
||||||||| ||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40092514 |
tacatatcccaaaacacgaagaaagcaaatggatcaatgaaaaatgaatacccttttgaatccaaatattcttggcttcactcagtaagaaagtcaccaa |
40092613 |
T |
|
| Q |
101 |
caaagacatggaataagaaggcaccaatagcaccaatggcaccaacacctatcaaagtatacaaagtggatcctataaacttcaaagaacttgttcagtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40092614 |
caaagacatggaataagaaggcaccaatagcaccaatggcaccaacacctgccaaagtatacaaagtggatccaataaacttcaaagaacttgttcagtc |
40092713 |
T |
|
| Q |
201 |
cctcacttgtgcacctcagttc |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
40092714 |
cctcacttgtgcacctcagttc |
40092735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40124986 - 40125207
Alignment:
| Q |
1 |
tacatatccaaaaacactaagaaaccaaagggatcaatgaaaaatgaatacccttttgaatccaaatattcttggcttcactcagtaagaaagtcaccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||| | || | | |||||||||||||||||||||||||| ||||| |
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| T |
40124986 |
tacatatccaaaaacactaagaaaccaaatggatcaattaaacatgaatgcccttgtcaaactcattattcttggcttcactcagtaagaaaatcacctg |
40125085 |
T |
|
| Q |
101 |
caaagacatggaataagaaggcaccaatagcaccaatggcaccaacacctatcaaagtatacaaagtggatcctataaacttcaaagaacttgttcagtc |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40125086 |
taaagacatggaataagaagttaccaatagcaccaatggcaccaacacctgccaaagtatacaaagtggatccaataaacttcaaagaacttgttcagtc |
40125185 |
T |
|
| Q |
201 |
cctcacttgtgcacctcagttc |
222 |
Q |
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|||||||||||||||||||||| |
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|
| T |
40125186 |
cctcacttgtgcacctcagttc |
40125207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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