View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14003_low_28 (Length: 215)
Name: NF14003_low_28
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14003_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 33994992 - 33995173
Alignment:
| Q |
17 |
ggcataatagcaaacttcatttgtccaacgttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacacgaacttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33994992 |
ggcataatagcaaacttcatttgtccaacgttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacacgaacttga |
33995091 |
T |
|
| Q |
117 |
atccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctctgccaagttgg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33995092 |
atccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttgccaagttgg |
33995173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 33999747 - 33999936
Alignment:
| Q |
9 |
gaagcataggcataatagcaaacttcatttgtccaacgttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacac |
108 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33999747 |
gaagcattggcataaccgtaaacttcatttgtccaacgttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacac |
33999846 |
T |
|
| Q |
109 |
gaacttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctctgccaagttgg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33999847 |
gaacttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctctgccaagttgg |
33999936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 34003115 - 34003304
Alignment:
| Q |
9 |
gaagcataggcataatagcaaacttcatttgtccaacgttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacac |
108 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34003115 |
gaagcattggcataaccgtaaacttcatttgtccaacgttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccacttgtttaacac |
34003214 |
T |
|
| Q |
109 |
gaacttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctctgccaagttgg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34003215 |
gaacttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctctgccaagttgg |
34003304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 34007526 - 34007715
Alignment:
| Q |
9 |
gaagcataggcataatagcaaacttcatttgtccaacgttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacac |
108 |
Q |
| |
|
||||||| ||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34007526 |
gaagcattggcataacagcgaacttcatttgtccgacgttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccacttgtttaacac |
34007625 |
T |
|
| Q |
109 |
gaacttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctctgccaagttgg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34007626 |
gaacttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttgccaagttgg |
34007715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 33989002 - 33989183
Alignment:
| Q |
17 |
ggcataatagcaaacttcatttgtccaacgttgcaatgtaatccatttttctcaccacatgaaaagtaataaggcttccatttgtttaacacgaacttga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || | ||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
33989002 |
ggcataatagcaaacttcatttgtccaacattgcaatgcaacctatttttctcaccacatgcaaagtaatagggcttccacttgtttaacacgaacttga |
33989101 |
T |
|
| Q |
117 |
atccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctctgccaagttgg |
198 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||||| | || | |||||||||||||||||||||||||||||| |
|
|
| T |
33989102 |
acccctctccaacaccttgtgtgtgatttgccaacatcttagccattttaagatcacatttcatgaagctctgccaagttgg |
33989183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University