View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14003_low_3 (Length: 516)

Name: NF14003_low_3
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14003_low_3
NF14003_low_3
[»] chr3 (9 HSPs)
chr3 (268-436)||(12807586-12807754)
chr3 (268-436)||(14458486-14458654)
chr3 (16-184)||(14458248-14458417)
chr3 (16-148)||(12807332-12807464)
chr3 (268-347)||(36092578-36092657)
chr3 (268-347)||(26950390-26950469)
chr3 (150-184)||(12807483-12807517)
chr3 (19-63)||(12807086-12807130)
chr3 (19-63)||(14458002-14458046)
[»] chr7 (5 HSPs)
chr7 (268-449)||(13604186-13604366)
chr7 (127-269)||(13603807-13603949)
chr7 (268-347)||(7892626-7892705)
chr7 (451-498)||(13604428-13604475)
chr7 (268-347)||(22005850-22005929)
[»] chr4 (5 HSPs)
chr4 (303-447)||(47964112-47964256)
chr4 (287-381)||(34337555-34337649)
chr4 (342-381)||(34337505-34337544)
chr4 (268-347)||(41860648-41860727)
chr4 (268-344)||(52681606-52681682)
[»] chr5 (3 HSPs)
chr5 (127-268)||(21122644-21122781)
chr5 (132-268)||(1673447-1673578)
chr5 (268-365)||(21122309-21122406)
[»] chr6 (2 HSPs)
chr6 (287-381)||(6717219-6717313)
chr6 (347-376)||(6717067-6717096)
[»] scaffold0252 (2 HSPs)
scaffold0252 (287-381)||(24099-24193)
scaffold0252 (342-381)||(24049-24088)
[»] chr8 (9 HSPs)
chr8 (287-379)||(23098580-23098672)
chr8 (287-381)||(27064393-27064487)
chr8 (357-452)||(23739404-23739499)
chr8 (268-347)||(14995255-14995334)
chr8 (347-381)||(23098478-23098512)
chr8 (347-381)||(23098528-23098562)
chr8 (347-381)||(27064503-27064537)
chr8 (347-376)||(23098377-23098406)
chr8 (347-376)||(27064609-27064638)
[»] scaffold0361 (1 HSPs)
scaffold0361 (16-58)||(8711-8753)
[»] chr2 (3 HSPs)
chr2 (268-347)||(26454777-26454856)
chr2 (268-347)||(13907132-13907211)
chr2 (268-347)||(40604614-40604693)
[»] chr1 (3 HSPs)
chr1 (268-338)||(52589300-52589369)
chr1 (373-446)||(39074666-39074739)
chr1 (19-63)||(50290996-50291040)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 268 - 436
Target Start/End: Original strand, 12807586 - 12807754
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagc 367  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| || |||||||||||||| ||     
T  12807586 aaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcataaactgtaaaatcaacaaaccgataaaaaacaaatgatttagt 12807685  T
Q  368 tactctcaatttcacaacaaaccataaaataccataagagaagcagatctaagcattaccttaacagtc 436  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  12807686 tactctcaatttcacaacaaaccattaaataccataagagaaacagatctaagcattaccttaatagtc 12807754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 268 - 436
Target Start/End: Original strand, 14458486 - 14458654
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagc 367  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||| | |||||| | |||| ||||||     
T  14458486 aaataaaattaaacaaatgctattactcttatcttaactcctaatttgaaaattcataaactgtaaaatcaataaatcgatcaaataaaaattattcagt 14458585  T
Q  368 tactctcaatttcacaacaaaccataaaataccataagagaagcagatctaagcattaccttaacagtc 436  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  14458586 tactctcaatttcacaacaaaccattaaataccataagagaagcaaatctaagcattaccttaacagtc 14458654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 14458248 - 14458417
Alignment:
Q  16 atccttccactaacggatcaacaaatccatcaccttacaacatatacacttacatacattaaagatgtccaactccatgttcgaagtttgcaacttcaac 115  Q
    ||||||||||||||  | ||||||||||| || ||||| |||| |||||  |||||||||||||||||||||||||||||   ||||||||| |||| |     
T  14458248 atccttccactaacataccaacaaatccaacaacttacgacatttacacaaacatacattaaagatgtccaactccatgtggtaagtttgcagcttcgat 14458347  T
Q  116 aggttcattcatatagactcttcgaacac-aaaagaagcatcatcactttgatctgtcaatgaaagaata 184  Q
    |||||| ||  |||||||||||  ||||| |||| |||||||||||||||||||||||||||||||||||    
T  14458348 aggttcgtttgtatagactctttcaacacaaaaaaaagcatcatcactttgatctgtcaatgaaagaata 14458417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 12807332 - 12807464
Alignment:
Q  16 atccttccactaacggatcaacaaatccatcaccttacaacatatacacttacatacattaaagatgtccaactccatgttcgaagtttgcaacttcaac 115  Q
    ||||||||||||||  ||||||||||||| || ||||||| || |||||  |||||||||||||||||||||||||||||   ||||||||| |||| ||    
T  12807332 atccttccactaacatatcaacaaatccaacaacttacaatatttacacaaacatacattaaagatgtccaactccatgtggtaagtttgcagcttcgac 12807431  T
Q  116 aggttcattcatatagactcttcgaacacaaaa 148  Q
    |||||| ||  |||||||| || ||||||||||    
T  12807432 aggttcgtttgtatagactttttgaacacaaaa 12807464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 36092578 - 36092657
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 347  Q
    |||||||| ||||||||||||  |||||||||   |||||| ||||| ||||||||| ||||| | ||||||||||||||    
T  36092578 aaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcatgaactgcaaaatcaacaaaccaa 36092657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 347
Target Start/End: Complemental strand, 26950469 - 26950390
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 347  Q
    |||||||| ||||||||||||  |||||||||   |||||| ||||| ||||||| | ||||| | ||||||||||||||    
T  26950469 aaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaa 26950390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 12807483 - 12807517
Alignment:
Q  150 aagcatcatcactttgatctgtcaatgaaagaata 184  Q
    |||||||||||||||||| ||||||||||||||||    
T  12807483 aagcatcatcactttgatatgtcaatgaaagaata 12807517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 12807086 - 12807130
Alignment:
Q  19 cttccactaacggatcaacaaatccatcaccttacaacatataca 63  Q
    ||||| |||||  ||||||||||||||||||||||||||| ||||    
T  12807086 cttcctctaacacatcaacaaatccatcaccttacaacatttaca 12807130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 14458002 - 14458046
Alignment:
Q  19 cttccactaacggatcaacaaatccatcaccttacaacatataca 63  Q
    ||||| |||||  ||||||||||||||||||||||||||| ||||    
T  14458002 cttcctctaacacatcaacaaatccatcaccttacaacatttaca 14458046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 9e-65; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 268 - 449
Target Start/End: Original strand, 13604186 - 13604366
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagc 367  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||||||||     
T  13604186 aaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcataaa-tgtaaaatcaacaaaccgatcaaaaacaaatgattcaga 13604284  T
Q  368 tactctcaatttcacaacaaaccataaaataccataagagaagcagatctaagcattaccttaacagtcggaatcaaatcgt 449  Q
    | ||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||| |||| |||| ||||||    
T  13604285 tgctctcaatttcacaacaaaccattaaataccataagagaagcaaatataagcattaccttaactgtcgaaatcgaatcgt 13604366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 127 - 269
Target Start/End: Original strand, 13603807 - 13603949
Alignment:
Q  127 tatagactcttcgaacacaaaagaagcatcatcactttga-tctgtcaatgaaagaatagcatatttaatatcatttatggttagtaaccaaaagtaatc 225  Q
    ||||||||| ||||||| | || ||| ||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  13603807 tatagactcctcgaacaaagaa-aagtatcatcactttgaatctgtcaatgaaagaatggcatatttaatatcatatatggttagtaaccaaaagtaatc 13603905  T
Q  226 cagaaatgatattcttatgaagattgtttaaaaaacataatcaa 269  Q
    |||||||| |||||||||| |||||||||| |||||| ||||||    
T  13603906 cagaaatgctattcttatgcagattgtttataaaacagaatcaa 13603949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 347
Target Start/End: Complemental strand, 7892705 - 7892626
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 347  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||| | ||||| | ||||||||||||||    
T  7892705 aaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaa 7892626  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 498
Target Start/End: Original strand, 13604428 - 13604475
Alignment:
Q  451 gccagcgaagttggaaaatgatggcgtagaaaaagggatagttaaatc 498  Q
    |||||| ||||||||||||||||||||||||||  |||| ||||||||    
T  13604428 gccagctaagttggaaaatgatggcgtagaaaagaggatggttaaatc 13604475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 347
Target Start/End: Complemental strand, 22005929 - 22005850
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 347  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||| | ||||| | |||||| |||||||    
T  22005929 aaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaaaaaaccaa 22005850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 303 - 447
Target Start/End: Original strand, 47964112 - 47964256
Alignment:
Q  303 aacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagctactctcaatttcacaacaaaccataaaataccat 402  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  47964112 aacccctaatttgaaaattcataaactgtaaaatcaacaaaccaatcaaaaacaaatgattcagttactctcaatttcacaacaaaccatttaataccat 47964211  T
Q  403 aagagaagcagatctaagcattaccttaacagtcggaatcaaatc 447  Q
    ||||||||||||| |||||| ||||||||| |||  |||||||||    
T  47964212 aagagaagcagatttaagcactaccttaacggtcaaaatcaaatc 47964256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 34337649 - 34337555
Alignment:
Q  287 ctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagctactctcaatttca 381  Q
    |||||| |||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34337649 ctattaatcttattttaaaccctaatttgaaaattcataaactgtaaaatcaacaaaccaatcaaaaacaaatgattcagctactctcaatttca 34337555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 34337544 - 34337505
Alignment:
Q  342 aaccaatcaaaaacaaatgattcagctactctcaatttca 381  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  34337544 aaccgatcaaaaacaaatgattcagctactatcaatttca 34337505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 41860648 - 41860727
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 347  Q
    |||||||| ||||||||||||  |||||||||   |||||| ||||| ||||||| | ||||| | ||||||||||||||    
T  41860648 aaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaa 41860727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 52681682 - 52681606
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||| | || || | |||||||||||    
T  52681682 aaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaattgcaaaatcaacaaac 52681606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 127 - 268
Target Start/End: Complemental strand, 21122781 - 21122644
Alignment:
Q  127 tatagactcttcgaacacaaaagaagcatcatcactttgatctgtcaatgaaagaatagcatatttaatatcatttatggttagtaaccaaaagtaatcc 226  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||    |||||||||| ||||||| |||||||||||||||||    
T  21122781 tatagactcttcgaacacaaaaaaaacatcatcactttgatctgtcaatgaaagaaatgc----ttaatatcatatatggtttgtaaccaaaagtaatcc 21122686  T
Q  227 agaaatgatattcttatgaagattgtttaaaaaacataatca 268  Q
    ||||||| |||| ||||||||||||||||||| ||| |||||    
T  21122685 agaaatgctatttttatgaagattgtttaaaagacagaatca 21122644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 132 - 268
Target Start/End: Original strand, 1673447 - 1673578
Alignment:
Q  132 actcttcgaacacaaaagaagcatcatcactttgatctgtcaatgaaagaatagcatatttaatatcatttatggttagtaaccaaaagtaatccagaaa 231  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||  ||    |||||||||| ||||||||||||||||||||||||||||||    
T  1673447 actcttcgaacacaaaa-aagtatcatcactttgatctgtcaatgaaagaaatgc----ttaatatcatatatggttagtaaccaaaagtaatccagaaa 1673541  T
Q  232 tgatattcttatgaagattgtttaaaaaacataatca 268  Q
    || |||| ||||||||||||||||||||||| |||||    
T  1673542 tgctatttttatgaagattgtttaaaaaacagaatca 1673578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 268 - 365
Target Start/End: Complemental strand, 21122406 - 21122309
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattca 365  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||| |||||||||||| |||||||||||||||||||    
T  21122406 aaataaaattaaacaaatgctattactcttatcttaacccctaatttaaaaattcatagaccgtaaaatcaacaaaccgatcaaaaacaaatgattca 21122309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 6717313 - 6717219
Alignment:
Q  287 ctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagctactctcaatttca 381  Q
    |||||| |||||| |||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  6717313 ctattaatcttattttaaaccctaatttgaaaattcataaactgtaaaatcaacaaaccgatcaaaaacaaatgattcagctactctcaatttca 6717219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 376
Target Start/End: Complemental strand, 6717096 - 6717067
Alignment:
Q  347 atcaaaaacaaatgattcagctactctcaa 376  Q
    ||||||||||||||||||||||||||||||    
T  6717096 atcaaaaacaaatgattcagctactctcaa 6717067  T

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Target: scaffold0252 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 24193 - 24099
Alignment:
Q  287 ctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagctactctcaatttca 381  Q
    |||||| |||||| |||| ||||||||| |||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||    
T  24193 ctattaatcttattttaaaccctaatttgaaaattcataaactataaaatcaacaaaccgatcaaaaacaaatgattcagctactctcaatttca 24099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 24088 - 24049
Alignment:
Q  342 aaccaatcaaaaacaaatgattcagctactctcaatttca 381  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  24088 aaccgatcaaaaacaaatgattcagctactatcaatttca 24049  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 287 - 379
Target Start/End: Complemental strand, 23098672 - 23098580
Alignment:
Q  287 ctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagctactctcaattt 379  Q
    |||||| |||||| |||| ||||||||| |||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  23098672 ctattaatcttattttaaaccctaatttgaaaattcataaattgtaaaatcaacaaaccgatcaaaaacaaatgattcagctactctcaattt 23098580  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 287 - 381
Target Start/End: Original strand, 27064393 - 27064487
Alignment:
Q  287 ctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagctactctcaatttca 381  Q
    |||||| |||||| |||| ||||||||| |||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||||    
T  27064393 ctattaatcttattttaaaccctaatttgaaaattcataaattgtaaaatcaacaaaccgatcaaaaaaaaatgattcagctactctcaatttca 27064487  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 357 - 452
Target Start/End: Complemental strand, 23739499 - 23739404
Alignment:
Q  357 aatgattcagctactctcaatttcacaacaaaccataaaataccataagagaagcagatctaagcattaccttaacagtcggaatcaaatcgtcgc 452  Q
    ||||||||||  ||| |||||||||||||||| |||  |||||||||| |||||||||||||||||||| |||||| || | ||||||||||||||    
T  23739499 aatgattcagtcactttcaatttcacaacaaatcatctaataccataaaagaagcagatctaagcattagcttaacggttgaaatcaaatcgtcgc 23739404  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 14995255 - 14995334
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 347  Q
    |||||||| ||||||||||||  |||||||||   |||||| ||||| ||||||| | ||||| | ||||||||||||||    
T  14995255 aaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaa 14995334  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 381
Target Start/End: Complemental strand, 23098512 - 23098478
Alignment:
Q  347 atcaaaaacaaatgattcagctactctcaatttca 381  Q
    ||||||||||||||||||||||||| |||||||||    
T  23098512 atcaaaaacaaatgattcagctactatcaatttca 23098478  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 381
Target Start/End: Complemental strand, 23098562 - 23098528
Alignment:
Q  347 atcaaaaacaaatgattcagctactctcaatttca 381  Q
    ||||||||||||||||||||||||| |||||||||    
T  23098562 atcaaaaacaaatgattcagctactatcaatttca 23098528  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 381
Target Start/End: Original strand, 27064503 - 27064537
Alignment:
Q  347 atcaaaaacaaatgattcagctactctcaatttca 381  Q
    ||||||||||||||||||||||||| |||||||||    
T  27064503 atcaaaaacaaatgattcagctactatcaatttca 27064537  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 376
Target Start/End: Complemental strand, 23098406 - 23098377
Alignment:
Q  347 atcaaaaacaaatgattcagctactctcaa 376  Q
    ||||||||||||||||||||||||||||||    
T  23098406 atcaaaaacaaatgattcagctactctcaa 23098377  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 376
Target Start/End: Original strand, 27064609 - 27064638
Alignment:
Q  347 atcaaaaacaaatgattcagctactctcaa 376  Q
    ||||||||||||||||||||||||||||||    
T  27064609 atcaaaaacaaatgattcagctactctcaa 27064638  T

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Target: scaffold0361 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 8711 - 8753
Alignment:
Q  16 atccttccactaacggatcaacaaatccatcaccttacaacat 58  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8711 atccttccactaacggatcaacaaatccatcaccttacaacat 8753  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 347
Target Start/End: Complemental strand, 26454856 - 26454777
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 347  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||| | ||||| | ||||||||||||||    
T  26454856 aaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaa 26454777  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 347
Target Start/End: Complemental strand, 13907211 - 13907132
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 347  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||| | ||||| | |||||| |||||||    
T  13907211 aaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaaaaaaccaa 13907132  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 347
Target Start/End: Complemental strand, 40604693 - 40604614
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 347  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||  | ||||| | ||||||||||||||    
T  40604693 aaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaatttctgaactgcaaaatcaacaaaccaa 40604614  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 338
Target Start/End: Complemental strand, 52589369 - 52589300
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaattt-caaaattcataaactgtataatca 338  Q
    ||||||||||||||||||| |||||||||||  |||||||  |||||  ||||||||||||||| |||||||    
T  52589369 aaatcaaattaaacaaatgttattactctta--ttaaccctcaatttgaaaaattcataaactgcataatca 52589300  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 446
Target Start/End: Original strand, 39074666 - 39074739
Alignment:
Q  373 tcaatttcacaacaaaccataaaataccataagagaagcagatctaagcattaccttaacagtcggaatcaaat 446  Q
    |||||||||||||||| |||   ||| ||||||||||||| || |||| ||||||| ||| |||| ||||||||    
T  39074666 tcaatttcacaacaaatcatctgatagcataagagaagcaaatttaaggattacctcaaccgtcgaaatcaaat 39074739  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 50291040 - 50290996
Alignment:
Q  19 cttccactaacggatcaacaaatccatcaccttacaacatataca 63  Q
    ||||| |||||  ||||||||||||||||||||||||||| ||||    
T  50291040 cttcctctaacacatcaacaaatccatcaccttacaacatttaca 50290996  T

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