View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14003_low_4 (Length: 493)
Name: NF14003_low_4
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14003_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 373 - 478
Target Start/End: Original strand, 26025999 - 26026104
Alignment:
| Q |
373 |
atttagaaaataatttgtgattaagttcaaatcaatttctgaccattttaaatgatgccacatcactctctggtgcgttggtgtgtatgtgcatgttgtg |
472 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| |
|
|
| T |
26025999 |
atttaaaaaatgatttgtgattaagttcaaatgaatttctgaccattttaaatgatgccacatcactctatggtgcgttcgtgtgtatttgcatgttgtg |
26026098 |
T |
|
| Q |
473 |
ccacat |
478 |
Q |
| |
|
|||||| |
|
|
| T |
26026099 |
ccacat |
26026104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 13363743 - 13363816
Alignment:
| Q |
78 |
gaagctgatgtttctattctgttctgaaaccgaccttgtgctctaattgttcaattttctctctgtcacgtgaag |
152 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||||| ||||||||||| |||||||||| || |||||||||| |
|
|
| T |
13363743 |
gaagctgatgtt-ctactctgttttgaaaccgacctgatgctctaattggtcaattttctgtcaatcacgtgaag |
13363816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 16792576 - 16792620
Alignment:
| Q |
330 |
ttagggcgaacctgcaggtttgtactgcattagtaatattatgat |
374 |
Q |
| |
|
||||||||||||||||| || ||| |||||||||||||||||||| |
|
|
| T |
16792576 |
ttagggcgaacctgcagcttagtattgcattagtaatattatgat |
16792620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 21571070 - 21571114
Alignment:
| Q |
375 |
ttagaaaataatttgtgattaagttcaaatcaatttctgaccatt |
419 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||| |||| |
|
|
| T |
21571070 |
ttagaaaatgatttgtgattaagttcaaatgaatttctgagcatt |
21571114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 374
Target Start/End: Original strand, 30577797 - 30577844
Alignment:
| Q |
327 |
aaattagggcgaacctgcaggtttgtactgcattagtaatattatgat |
374 |
Q |
| |
|
|||||||||| ||||||||| || ||| |||||||||||||||||||| |
|
|
| T |
30577797 |
aaattagggcaaacctgcagcttagtattgcattagtaatattatgat |
30577844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 29410997 - 29411041
Alignment:
| Q |
375 |
ttagaaaataatttgtgattaagttcaaatcaatttctgaccatt |
419 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||||| |||| |
|
|
| T |
29410997 |
ttagcaaatgatttgtgattaagttcaaatgaatttctgagcatt |
29411041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University