View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14003_low_5 (Length: 435)

Name: NF14003_low_5
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14003_low_5
NF14003_low_5
[»] chr8 (27 HSPs)
chr8 (29-421)||(33511051-33511444)
chr8 (254-418)||(36143286-36143450)
chr8 (290-418)||(29700233-29700361)
chr8 (262-417)||(2518590-2518748)
chr8 (245-411)||(45512699-45512870)
chr8 (282-402)||(10824377-10824497)
chr8 (279-402)||(18474173-18474296)
chr8 (262-330)||(29520585-29520653)
chr8 (248-399)||(13171865-13172020)
chr8 (262-409)||(45419164-45419313)
chr8 (259-389)||(16252857-16252989)
chr8 (301-418)||(44373740-44373861)
chr8 (254-313)||(43732484-43732543)
chr8 (245-311)||(25288810-25288876)
chr8 (245-311)||(25300145-25300211)
chr8 (269-404)||(32043522-32043661)
chr8 (262-330)||(15215560-15215628)
chr8 (254-330)||(30456501-30456576)
chr8 (262-411)||(41971982-41972131)
chr8 (262-317)||(28300414-28300469)
chr8 (262-317)||(37077690-37077745)
chr8 (279-330)||(44681328-44681379)
chr8 (264-338)||(25439394-25439468)
chr8 (281-330)||(16705706-16705755)
chr8 (262-330)||(10080194-10080262)
chr8 (366-418)||(17491818-17491870)
chr8 (254-330)||(36395239-36395315)
[»] chr6 (13 HSPs)
chr6 (248-404)||(33083969-33084129)
chr6 (236-383)||(31818437-31818582)
chr6 (281-384)||(8364520-8364623)
chr6 (248-330)||(33998293-33998375)
chr6 (248-330)||(12134190-12134272)
chr6 (285-418)||(2079288-2079425)
chr6 (262-330)||(5129126-5129194)
chr6 (262-410)||(608084-608234)
chr6 (264-384)||(6641640-6641764)
chr6 (267-317)||(7513285-7513335)
chr6 (260-332)||(546922-546994)
chr6 (287-339)||(4796889-4796941)
chr6 (262-330)||(9594001-9594069)
[»] chr7 (29 HSPs)
chr7 (254-418)||(30200160-30200324)
chr7 (254-398)||(36514424-36514570)
chr7 (236-401)||(39811856-39812025)
chr7 (259-420)||(48736094-48736259)
chr7 (245-411)||(25579281-25579445)
chr7 (262-411)||(19262637-19262788)
chr7 (262-402)||(47848599-47848743)
chr7 (254-420)||(5335839-5336007)
chr7 (254-403)||(37617861-37618015)
chr7 (283-330)||(25826759-25826806)
chr7 (301-385)||(27893778-27893864)
chr7 (245-335)||(28542168-28542257)
chr7 (236-403)||(33072853-33073022)
chr7 (281-327)||(47796430-47796476)
chr7 (325-410)||(36136756-36136841)
chr7 (325-418)||(42187462-42187555)
chr7 (254-330)||(1740714-1740790)
chr7 (325-401)||(27021906-27021982)
chr7 (279-416)||(36101964-36102105)
chr7 (262-403)||(43281601-43281744)
chr7 (279-330)||(35713621-35713672)
chr7 (259-317)||(23404340-23404398)
chr7 (254-295)||(14593678-14593719)
chr7 (254-295)||(16013201-16013242)
chr7 (371-420)||(18605341-18605390)
chr7 (371-420)||(18637600-18637649)
chr7 (371-420)||(18651034-18651083)
chr7 (254-330)||(35906490-35906566)
chr7 (262-330)||(45836769-45836837)
[»] chr3 (26 HSPs)
chr3 (245-384)||(42510245-42510385)
chr3 (248-410)||(54128289-54128455)
chr3 (245-418)||(2340911-2341088)
chr3 (282-330)||(22902751-22902799)
chr3 (269-418)||(36820158-36820309)
chr3 (303-398)||(54365194-54365290)
chr3 (280-417)||(39600879-39601020)
chr3 (233-410)||(52138696-52138877)
chr3 (254-317)||(45728063-45728126)
chr3 (248-330)||(345000-345082)
chr3 (236-330)||(23534858-23534952)
chr3 (279-384)||(44134061-44134164)
chr3 (326-404)||(50960844-50960922)
chr3 (325-402)||(3987039-3987116)
chr3 (252-418)||(46140349-46140517)
chr3 (254-403)||(25191296-25191447)
chr3 (245-381)||(50249289-50249432)
chr3 (238-330)||(50621649-50621741)
chr3 (279-325)||(48777509-48777555)
chr3 (373-418)||(30572995-30573040)
chr3 (325-418)||(34719269-34719362)
chr3 (302-342)||(2198836-2198876)
chr3 (262-330)||(38054626-38054694)
chr3 (254-330)||(46568033-46568109)
chr3 (254-330)||(51447998-51448074)
chr3 (280-380)||(55244245-55244345)
[»] chr5 (34 HSPs)
chr5 (250-384)||(11002654-11002790)
chr5 (279-418)||(9235011-9235149)
chr5 (265-418)||(37124497-37124652)
chr5 (279-330)||(683981-684032)
chr5 (279-415)||(6888935-6889075)
chr5 (292-404)||(41833793-41833907)
chr5 (307-414)||(33667188-33667297)
chr5 (248-402)||(10082952-10083109)
chr5 (265-418)||(30588381-30588534)
chr5 (279-384)||(14667699-14667814)
chr5 (262-329)||(21093701-21093768)
chr5 (300-415)||(28676562-28676677)
chr5 (248-401)||(1275176-1275332)
chr5 (297-404)||(14749267-14749378)
chr5 (248-317)||(16134481-16134550)
chr5 (254-330)||(2075763-2075839)
chr5 (261-317)||(6368227-6368283)
chr5 (243-295)||(27998329-27998381)
chr5 (262-383)||(32516483-32516606)
chr5 (327-386)||(27887-27946)
chr5 (262-317)||(21952276-21952331)
chr5 (283-403)||(31636132-31636254)
chr5 (262-328)||(7678405-7678471)
chr5 (325-418)||(79505-79598)
chr5 (245-330)||(5305524-5305609)
chr5 (245-330)||(28186957-28187042)
chr5 (350-411)||(29938132-29938193)
chr5 (280-317)||(38341723-38341760)
chr5 (245-330)||(41110030-41110115)
chr5 (254-330)||(1287878-1287954)
chr5 (285-418)||(7359457-7359593)
chr5 (254-310)||(24178427-24178483)
chr5 (265-346)||(34194767-34194850)
chr5 (350-418)||(42199303-42199371)
[»] chr1 (36 HSPs)
chr1 (245-411)||(1661334-1661508)
chr1 (248-420)||(39422238-39422412)
chr1 (267-394)||(35672618-35672745)
chr1 (325-418)||(43423711-43423804)
chr1 (336-416)||(52837528-52837608)
chr1 (282-418)||(35828747-35828887)
chr1 (325-411)||(2544591-2544677)
chr1 (264-338)||(4590805-4590879)
chr1 (248-403)||(9509229-9509388)
chr1 (262-355)||(12135655-12135747)
chr1 (285-403)||(39140468-39140590)
chr1 (254-330)||(34792638-34792714)
chr1 (259-326)||(16822312-16822379)
chr1 (254-385)||(6641049-6641181)
chr1 (248-330)||(52442793-52442875)
chr1 (249-330)||(4379917-4379998)
chr1 (248-382)||(9599627-9599765)
chr1 (248-418)||(14226026-14226198)
chr1 (334-411)||(32404730-32404807)
chr1 (254-403)||(1210662-1210815)
chr1 (254-330)||(40419556-40419632)
chr1 (262-330)||(40920826-40920894)
chr1 (248-295)||(26016348-26016395)
chr1 (325-404)||(26016429-26016508)
chr1 (262-402)||(32231167-32231311)
chr1 (254-401)||(8671837-8671986)
chr1 (325-403)||(43240591-43240669)
chr1 (332-418)||(48431603-48431689)
chr1 (268-317)||(16273122-16273171)
chr1 (236-317)||(19936421-19936502)
chr1 (262-330)||(696194-696262)
chr1 (262-330)||(4001744-4001812)
chr1 (254-330)||(9592651-9592727)
chr1 (262-330)||(15085859-15085927)
chr1 (254-330)||(30202419-30202495)
chr1 (254-403)||(51440977-51441130)
[»] chr4 (38 HSPs)
chr4 (248-417)||(17900391-17900564)
chr4 (262-418)||(54470132-54470292)
chr4 (246-411)||(50662298-50662466)
chr4 (279-404)||(10208980-10209105)
chr4 (279-346)||(20998954-20999025)
chr4 (279-402)||(51252674-51252799)
chr4 (236-418)||(29398718-29398903)
chr4 (325-418)||(41192828-41192921)
chr4 (262-326)||(2588906-2588970)
chr4 (254-403)||(33191060-33191213)
chr4 (262-329)||(20105761-20105828)
chr4 (325-420)||(35555842-35555937)
chr4 (287-418)||(3254082-3254216)
chr4 (254-316)||(44860771-44860833)
chr4 (372-417)||(13805463-13805508)
chr4 (245-330)||(27991704-27991789)
chr4 (325-418)||(31339529-31339621)
chr4 (262-327)||(40933188-40933253)
chr4 (246-384)||(49987337-49987479)
chr4 (254-403)||(31960026-31960179)
chr4 (262-346)||(45423544-45423628)
chr4 (254-401)||(30807511-30807658)
chr4 (279-330)||(45185306-45185357)
chr4 (262-401)||(39100749-39100890)
chr4 (350-404)||(47611744-47611798)
chr4 (248-305)||(18499784-18499841)
chr4 (325-418)||(28497482-28497574)
chr4 (254-295)||(33227126-33227167)
chr4 (254-330)||(12494667-12494743)
chr4 (254-330)||(23906590-23906666)
chr4 (368-404)||(25257792-25257828)
chr4 (254-338)||(43070045-43070129)
chr4 (254-330)||(43433835-43433911)
chr4 (254-403)||(48622755-48622906)
chr4 (246-383)||(50680648-50680789)
chr4 (364-404)||(53518531-53518571)
chr4 (364-400)||(56225097-56225133)
chr4 (254-330)||(56375207-56375283)
[»] scaffold0018 (1 HSPs)
scaffold0018 (245-411)||(44072-44245)
[»] chr2 (24 HSPs)
chr2 (267-404)||(9578914-9579053)
chr2 (254-336)||(9647888-9647970)
chr2 (245-316)||(45077656-45077727)
chr2 (248-411)||(7825269-7825438)
chr2 (263-402)||(9556582-9556724)
chr2 (289-420)||(11017268-11017401)
chr2 (262-384)||(12734626-12734750)
chr2 (262-410)||(40759024-40759177)
chr2 (262-410)||(41763247-41763398)
chr2 (262-399)||(41330062-41330195)
chr2 (271-383)||(44411650-44411762)
chr2 (283-330)||(37393455-37393502)
chr2 (325-418)||(11412713-11412806)
chr2 (325-418)||(43752144-43752237)
chr2 (262-317)||(16097292-16097347)
chr2 (249-295)||(4598888-4598934)
chr2 (350-408)||(41779515-41779573)
chr2 (248-418)||(23714458-23714629)
chr2 (248-418)||(24102130-24102301)
chr2 (254-403)||(3243865-3244016)
chr2 (279-315)||(21834495-21834531)
chr2 (254-330)||(36183368-36183444)
chr2 (262-402)||(38434876-38435021)
chr2 (254-330)||(42092436-42092512)


Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 29 - 421
Target Start/End: Original strand, 33511051 - 33511444
Alignment:
Q  29 tttctatttactgtgaggtttctttacaattgtgtttaatataattgaaatgctctgtttgtttttatttctgctaacnnnnnnnn-gtcacaacaaagt 127  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||         |||||||||||||    
T  33511051 tttctatttactgtgaggtttctttacaattgtgtttaatgtaattgaaatgctttgtttgtttttatttctgctaactttttttttgtcacaacaaagt 33511150  T
Q  128 atggagtagtttaggcaaaatattttgaagttgggatgaatgatggggtggtttgcttttgtatttgccttatggtttatttgtgattaatttttgtcct 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33511151 atggagtagtttaggcaaaatattttgaagttgggatgaatgatggggtggtttgcttttgtatttgccttatggtttctttgtgattaatttttgtcct 33511250  T
Q  228 tgcttaagatgaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattaga 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33511251 tgcttaagatgaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagatatgattagaaatgaaaatattaga 33511350  T
Q  328 gagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagttaa 421  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||    
T  33511351 gagttggggtaacacctatggtagaaaaaatgatgaaaaatagacttaggtggtttgagtatacagagagaagacctatagattctgtagttaa 33511444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 254 - 418
Target Start/End: Original strand, 36143286 - 36143450
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaa 353  Q
    ||||||| |||||||||||| | | |  |||||||||||||| |||||||||||||||||| ||||| |||||||||| | |||| ||||||| ||||||    
T  36143286 tagcagagatgaggatgttgtgttggtcgtgtggtaagactagatgagataggattagaaaggaaaagattagagagtcgaggtagcacctatagcagaa 36143385  T
Q  354 aaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
     | ||| || ||||||||||||||||||||| | || |||||| ||||||| |||||| ||||||    
T  36143386 tagatggtggaaaatagacttaggtggtttgggcatttagagaaaagacctatagattctgtagt 36143450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 290 - 418
Target Start/End: Original strand, 29700233 - 29700361
Alignment:
Q  290 agactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtat 389  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||| | |||||| |||  | ||| | | ||||||||||||| | ||    
T  29700233 agactagatgagataggattagaaatgaaaatgttagagagttggggtagcacctatagtagaaaagatggaggaaagttggcttaggtggtttgggcat 29700332  T
Q  390 atagagagaagacctttagattatgtagt 418  Q
    ||||||| |||||| || |||| ||||||    
T  29700333 atagagaaaagaccattggattctgtagt 29700361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 262 - 417
Target Start/End: Complemental strand, 2518748 - 2518590
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag----ttggggtaacacctatggcagaaaaaa 357  Q
    ||||| |||||||  | ||||||||||||||||| ||||||||||||||||||||| || |||||||||    |||||||| |||||   | |||||| |    
T  2518748 atgagaatgttgcattggatgtgtggtaagactagatgagataggattagaaatgacaa-attagagagaaaattggggtagcacctcaagtagaaaaga 2518650  T
Q  358 tgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtag 417  Q
    || || |||||||  ||||||||||||| ||| |||||||||||| | |||||| |||||    
T  2518649 tggtggaaaataggtttaggtggtttgattatgtagagagaagacttgtagattttgtag 2518590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 411
Target Start/End: Complemental strand, 45512870 - 45512699
Alignment:
Q  245 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt------agagagttggggta 338  Q
    ||||||||||||| || ||||| ||||| || | ||||||||||||||||| || || |||| |||||||||||||||||      || |||||||||||    
T  45512870 aaataagcatagcggagatgagaatgtttcgttggatgtgtggtaagactagat-aggtagggttagaaatgaaaatattaaagagagggagttggggta 45512772  T
Q  339 acacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagatt 411  Q
     ||||||| | |||||| |||||| ||||||  ||||| ||||||| | ||||| |||||||| || ||||||    
T  45512771 gcacctatagtagaaaagatgatggaaaataagcttagatggtttgggcatataaagagaagatctctagatt 45512699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 282 - 402
Target Start/End: Complemental strand, 10824497 - 10824377
Alignment:
Q  282 gtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggt 381  Q
    |||||||||||||| ||| |||| |||||||||| ||||||||||||||||| || | ||||||  | |||||| ||| |  ||||||| ||||||||||    
T  10824497 gtgtggtaagactagatgggatatgattagaaataaaaatattagagagttgaggcagcacctaaagtagaaaagatggtcgaaaataggcttaggtggt 10824398  T
Q  382 ttgagtatatagagagaagac 402  Q
    ||| |||| |||||| |||||    
T  10824397 ttgggtatttagagaaaagac 10824377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 402
Target Start/End: Complemental strand, 18474296 - 18474173
Alignment:
Q  279 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggt 378  Q
    ||||||||||||| ||| ||| ||||| | ||||||||| |||||||||||||| | ||| ||||||| | |||||  ||| || ||| ||| ||||| |    
T  18474296 gatgtgtggtaaggctagatgtgatagaaatagaaatgacaatattagagagttagagtagcacctatagtagaaatgatggtggaaactaggcttagtt 18474197  T
Q  379 ggtttgagtatatagagagaagac 402  Q
    |||||||| || ||||||||||||    
T  18474196 ggtttgagcatgtagagagaagac 18474173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 29520585 - 29520653
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    |||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||| |  |||||||||    
T  29520585 atgaggatgttgcgttggatgtgtggtaagactagatgggataggattagaaatgataccattagagag 29520653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 399
Target Start/End: Complemental strand, 13172020 - 13171865
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacc 343  Q
    |||||| | |||| ||||| |||||||  | ||||||| ||||||||| | | ||||||||||||||||| || |||    |||||||||||| | ||||    
T  13172020 taagcacatcagagatgagaatgttgcattggatgtgtagtaagactagacgggataggattagaaatgacaagattagagagagagttggggaagcacc 13171921  T
Q  344 tatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaa 399  Q
    ||| | |||||| ||| || ||||||  ||||||||||||| | ||||| ||||||    
T  13171920 tatagtagaaaagatggtggaaaatatgcttaggtggtttgggcatataaagagaa 13171865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 409
Target Start/End: Original strand, 45419164 - 45419313
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag--ttggggtaacacctatggcagaaaaaatg 359  Q
    |||| ||||||||| | |||  |||||||||||| | | |||| |||||| ||||| |  |||||||||  |||||||| ||||||| | |||||| |||    
T  45419164 atgaagatgttgcgttggattagtggtaagactagaagggataagattaggaatgacaccattagagagaattggggtagcacctatagtagaaaagatg 45419263  T
Q  360 atgaaaaatagacttaggtggtttgagtatatagagagaagacctttaga 409  Q
     |  ||||||||||||||||||||| | || |||||| ||||||| ||||    
T  45419264 gtataaaatagacttaggtggtttgggcatgtagagataagacctgtaga 45419313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 389
Target Start/End: Original strand, 16252857 - 16252989
Alignment:
Q  259 gaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcagaaaaa 356  Q
    ||||||||||||||| | | |||||||||||||| || ||||||||  ||||||||||| || |||  ||||||||| |||  | ||||||| ||||||     
T  16252857 gaaatgaggatgttgtgttggatgtgtggtaagattagatgagataaaattagaaatgacaacattagagagagttgaggttgctcctatggaagaaaag 16252956  T
Q  357 atgatgaaaaatagacttaggtggtttgagtat 389  Q
    |||||  ||| ||||||  | ||||||||||||    
T  16252957 atgatagaaactagactaggatggtttgagtat 16252989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 418
Target Start/End: Original strand, 44373740 - 44373861
Alignment:
Q  301 gataggattagaaatgaaaatatta----gagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagaga 396  Q
    |||||||||||||||||||||||||    ||||||||| ||| ||||||  | |||||| ||| || ||||||| |||  |||||||||| || |||||     
T  44373740 gataggattagaaatgaaaatattagagtgagagttggagtagcacctaaagtagaaaagatggtggaaaataggcttgagtggtttgagcatgtagagt 44373839  T
Q  397 gaagacctttagattatgtagt 418  Q
     ||||||| |||||| ||||||    
T  44373840 aaagacctatagattttgtagt 44373861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 43732484 - 43732543
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaa 313  Q
    ||||||||||||||||||| || | ||||||||||||||||| ||| ||||| |||||||    
T  43732484 tagcagaaatgaggatgttacgttggatgtgtggtaagactagatgtgatagaattagaa 43732543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 25288810 - 25288876
Alignment:
Q  245 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattag 311  Q
    |||||||  ||||||| |||||||||||| ||| |||  |||||||||||| |||||||||||||||    
T  25288810 aaataagtgtagcagatatgaggatgttgagctggattagtggtaagactagatgagataggattag 25288876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 25300145 - 25300211
Alignment:
Q  245 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattag 311  Q
    |||||||  ||||||| |||||||||||| ||| |||  |||||||||||| |||||||||||||||    
T  25300145 aaataagtgtagcagatatgaggatgttgagctggattagtggtaagactagatgagataggattag 25300211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 404
Target Start/End: Original strand, 32043522 - 32043661
Alignment:
Q  269 tgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaaaaatgatgaa 364  Q
    ||||||| | ||||||||||||||||| | | ||||| ||||||||||| || |||    |||||||||||||| ||||||| | | |||| ||| |  |    
T  32043522 tgttgcgttggatgtgtggtaagactagacgggatagaattagaaatgacaacattagagagagagttggggtatcacctatagtacaaaagatggtaga 32043621  T
Q  365 aaatagacttaggtggtttgagtatatagagagaagacct 404  Q
    || ||||||| |||||||||   || ||||||||||||||    
T  32043622 aactagactttggtggtttggccatgtagagagaagacct 32043661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 15215628 - 15215560
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    |||||||||||| ||| |||| ||||||||||||||   ||||||||||||||||| |  |||||||||    
T  15215628 atgaggatgttgtgctggatgagtggtaagactatacaggataggattagaaatgacaccattagagag 15215560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 30456576 - 30456501
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||||||||||||| | ||||||||||||||| | ||| ||||| |||||||||||  | |||||||||    
T  30456576 tagcagagatgaggatgttgcgttggatgtgtggtaagacca-atgggatagaattagaaatgacgacattagagag 30456501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 411
Target Start/End: Complemental strand, 41972131 - 41971982
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattag--agagttggggtaacacctatggcagaaaaaatg 359  Q
    ||||||||||||   | |||||||| ||||| || ||||||||| ||||||||||| ||||||||  |||||| ||||||||||||  | |||||| |||    
T  41972131 atgaggatgttgtattggatgtgtgataagatta-atgagatagaattagaaatgagaatattagagagagttagggtaacaccta-agtagaaaagatg 41972034  T
Q  360 atgaaaaatagacttaggtggtttgagtatatagagagaagacctttagatt 411  Q
     || ||||||   ||||||||||||   || |||||||||||| | ||||||    
T  41972033 gtggaaaataagtttaggtggtttggacatgtagagagaagacgtgtagatt 41971982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 28300469 - 28300414
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 317  Q
    |||||||||||| | | ||||||| ||||||||| |||||||| ||||||||||||    
T  28300469 atgaggatgttgtgttggatgtgtagtaagactagatgagataagattagaaatga 28300414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 37077690 - 37077745
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 317  Q
    |||||||||||||||| |||| ||||||| |||| | ||||||||||||| |||||    
T  37077690 atgaggatgttgcgctggatgagtggtaaaactagacgagataggattaggaatga 37077745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 44681379 - 44681328
Alignment:
Q  279 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||||||||||||| | |||||| |||||||||||| || |||||||||    
T  44681379 gatgtgtggtaagactagacgagataagattagaaatgacaacattagagag 44681328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 338
Target Start/End: Original strand, 25439394 - 25439468
Alignment:
Q  264 gaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggta 338  Q
    |||||||||||||| |||  |||||||||||| ||||||||||| ||| || || |  |||||||||| ||||||    
T  25439394 gaggatgttgcgctggattagtggtaagactagatgagataggaataggaacgataccattagagagtgggggta 25439468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 16705706 - 16705755
Alignment:
Q  281 tgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||||||||||| ||| ||||| ||||||||||| || |||||||||    
T  16705706 tgtgtggtaagactagatgggatagaattagaaatgacaacattagagag 16705755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 10080262 - 10080194
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    |||| ||||||||| | | ||| ||||||||||| | |||||| |||||||||||| || |||||||||    
T  10080262 atgatgatgttgcgttgggtgtttggtaagactagacgagataagattagaaatgacaacattagagag 10080194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 17491870 - 17491818
Alignment:
Q  366 aatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    |||| |||||||||||||| |||| |||||||||||||| || ||| ||||||    
T  17491870 aataaacttaggtggtttgggtatgtagagagaagacctatacattttgtagt 17491818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 36395315 - 36395239
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  36395315 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgacaccattagagag 36395239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 248 - 404
Target Start/End: Original strand, 33083969 - 33084129
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacc 343  Q
    ||||| ||||||||||||||||| |||| | ||||||||||||||||| ||| ||||| |||||||||||  |||||    |||||||||||||| ||||    
T  33083969 taagcgtagcagaaatgaggatgctgcgttggatgtgtggtaagactagatgggatagaattagaaatgacgatattagagagagagttggggtagcacc 33084068  T
Q  344 tatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacct 404  Q
    ||||| |||||| ||| |  ||| ||||||||||||||||| | || ||||||||||||||    
T  33084069 tatggtagaaaagatggtagaaactagacttaggtggtttgggaatgtagagagaagacct 33084129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 236 - 383
Target Start/End: Original strand, 31818437 - 31818582
Alignment:
Q  236 atgaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggg 335  Q
    ||||| || |||||||  ||||||| ||||| |||||||  | ||| |||| ||||| || |||||||| |||||||||||||| ||||  ||||| |||    
T  31818437 atgagaataaaataagtgtagcagagatgagaatgttgcattggatatgtgttaagattagatgagataagattagaaatgaaattatt--agagtcggg 31818534  T
Q  336 gtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggttt 383  Q
    ||| ||||||| | | |||||||| || ||||||||||||||||||||    
T  31818535 gtagcacctatagtacaaaaaatggtggaaaatagacttaggtggttt 31818582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 281 - 384
Target Start/End: Original strand, 8364520 - 8364623
Alignment:
Q  281 tgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtgg 380  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||||||| |||||| ||| || |||| | ||||||  || |  ||||||| |||||||||    
T  8364520 tgtgtggtaagactagatgggataggattagaaatgacaatattagacagttggagtagcaactatagtagaaaaggtggttgaaaataggcttaggtgg 8364619  T
Q  381 tttg 384  Q
    ||||    
T  8364620 tttg 8364623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 33998375 - 33998293
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||| ||||||| |||| ||||||||| | ||||||||||||||||| ||| |||||||||||||||||  | |||||||||    
T  33998375 taagcgtagcagagatgaagatgttgcgttggatgtgtggtaagactagatgtgataggattagaaatgactacattagagag 33998293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 12134272 - 12134190
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||||||||| ||||| |||||| | | ||||||||| ||||| | |||| |||| ||||||||||| ||||||||||||    
T  12134272 taagcatagcagagatgagaatgttgtgttggatgtgtggcaagacaagatgatatagaattagaaatgacaatattagagag 12134190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 418
Target Start/End: Original strand, 2079288 - 2079425
Alignment:
Q  285 tggtaagactatatgagataggat-tagaaatgaaaatattagagagt---tggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtgg 380  Q
    ||||||||||| |||||||| ||| ||||||||| ||||||||||||    | ||||| || |||| | |||||| ||| || ||||||| |||| ||||    
T  2079288 tggtaagactaaatgagatatgatatagaaatgacaatattagagagggagttgggtagcatctatagtagaaaagatggtggaaaataggcttaagtgg 2079387  T
Q  381 tttgagtatatagagagaagacctttagattatgtagt 418  Q
    |||  |||| |||||||||||  | |||||||||||||    
T  2079388 tttaggtatgtagagagaagatttgtagattatgtagt 2079425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 5129194 - 5129126
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    |||||||||||||| |  ||||||||||||| |  ||| ||| ||||||||||||| ||||||||||||    
T  5129194 atgaggatgttgcgttgaatgtgtggtaagattcgatgtgatcggattagaaatgacaatattagagag 5129126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 410
Target Start/End: Original strand, 608084 - 608234
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcagaaaaaatg 359  Q
    ||||||||||| || | |||| |||||||||||| ||  ||||||||||| ||||| |  |||  |||||||  ||||| ||||||| | ||||||  ||    
T  608084 atgaggatgttccgttggatgagtggtaagactagataggataggattaggaatgacaccattagagagagtgagggtatcacctatagtagaaaagttg 608183  T
Q  360 atgaaaaatagacttaggtggtttgagtatatagagagaagacctttagat 410  Q
    ||  ||||||| ||||| |||||||   || |||||||||||||| |||||    
T  608184 atagaaaataggcttagatggtttggacatgtagagagaagacctgtagat 608234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 384
Target Start/End: Complemental strand, 6641764 - 6641640
Alignment:
Q  264 gaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattag----agagttggggtaacacctatggcagaaaaaatg 359  Q
    |||||||||||| | ||||| | ||||||||| ||| |||| |||| ||||||| ||||||||    |||||||||||| ||||||| | |||||| |||    
T  6641764 gaggatgttgcgttcgatgttttgtaagactagatgggataagattggaaatgacaatattagagatagagttggggtatcacctatagtagaaaagatg 6641665  T
Q  360 atgaaaaatagacttaggtggtttg 384  Q
     |  ||| ||||||| ||| |||||    
T  6641664 gtagaaactagacttgggttgtttg 6641640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 7513335 - 7513285
Alignment:
Q  267 gatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 317  Q
    ||||||||| | ||||||||||||||||| |||||||| |||| |||||||    
T  7513335 gatgttgcgttggatgtgtggtaagactagatgagataagatttgaaatga 7513285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 546922 - 546994
Alignment:
Q  260 aaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagtt 332  Q
    |||| ||||||||||| | |||||||| ||| |||| || ||||| ||||| ||||||  |||||||||||||    
T  546922 aaataaggatgttgcgttggatgtgtgataaaactagataagatatgattaaaaatgaccatattagagagtt 546994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 4796889 - 4796941
Alignment:
Q  287 gtaagactatatgagataggattagaaatgaaaatattagagagttggggtaa 339  Q
    |||| |||| || |||||||||||||| ||| ||||||||||||||| |||||    
T  4796889 gtaaaactagataagataggattagaattgacaatattagagagttgtggtaa 4796941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 9594069 - 9594001
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    |||||||||||||| | |||| |||||||||||| | | ||||||||||| ||||| |  |||||||||    
T  9594069 atgaggatgttgcgttggatgagtggtaagactagacgggataggattaggaatgacaccattagagag 9594001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 418
Target Start/End: Complemental strand, 30200324 - 30200160
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaa 353  Q
    ||||||| |||||||||||| | | |||||||||||||| || ||| |||| |||||||||||| || ||||||||||| ||||||||||||| | ||||    
T  30200324 tagcagagatgaggatgttgtgttggatgtgtggtaagattagatgggatatgattagaaatgacaacattagagagttagggtaacacctatagtagaa 30200225  T
Q  354 aaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    || ||| || ||| ||| |||||||| |||  | || || | |||||||||  ||||||||||||    
T  30200224 aagatggtggaaactaggcttaggtgattttggcatgtaaatagaagacctcgagattatgtagt 30200160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 254 - 398
Target Start/End: Complemental strand, 36514570 - 36514424
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcag 351  Q
    ||||||| |||||||||||||| | ||||||||||||||||| | | ||||| |||||||| || || |||  |||||||||||||| ||||||| | ||    
T  36514570 tagcagagatgaggatgttgcgttggatgtgtggtaagactaaacgggatagaattagaaaggacaacattagagagagttggggtagcacctatagtag 36514471  T
Q  352 aaaaaatgatgaaaaatagacttaggtggtttgagtatatagagaga 398  Q
    |||| ||| |  ||| ||||||||||||||||| | || ||||||||    
T  36514470 aaaagatggtagaaactagacttaggtggtttgggcatgtagagaga 36514424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 401
Target Start/End: Original strand, 39811856 - 39812025
Alignment:
Q  236 atgaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagt 331  Q
    ||||| || ||| |||| |||| || |||||||||||||  | ||||||||||||||||| | | ||||||||||||||||| || |||    |||||||    
T  39811856 atgagaataaaacaagcgtagcggatatgaggatgttgctttggatgtgtggtaagactagacgtgataggattagaaatgacaacattagagagagagt 39811955  T
Q  332 tggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaaga 401  Q
    ||||| | |||||||   |||||||||| |||||| | | ||||||| ||||| | || |||||||||||    
T  39811956 tggggcagcacctatcatagaaaaaatggtgaaaactcggcttaggtagtttgggcatgtagagagaaga 39812025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 420
Target Start/End: Complemental strand, 48736259 - 48736094
Alignment:
Q  259 gaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaa 354  Q
    ||||||||||||||||| |  |||||||||||||||| ||||||||  |||||||||||  | |||    |||||||||||||| ||||||  | |||||    
T  48736259 gaaatgaggatgttgcgttgaatgtgtggtaagactagatgagataaaattagaaatgacgacattatagagagagttggggtagcacctacagtagaaa 48736160  T
Q  355 aaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagtta 420  Q
    | |||    ||| |||||||||||||||||   || ||||| |||||||| | |||||||||||||    
T  48736159 agatgggagaaactagacttaggtggtttgctcatgtagagcgaagacctgtggattatgtagtta 48736094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 411
Target Start/End: Complemental strand, 25579445 - 25579281
Alignment:
Q  245 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagt-tgggg--taaca 341  Q
    |||||||| |||  || |||||||||||||| | |||||||||||| ||||     |||||||||||||||||  | |||||||||  |||||  || ||    
T  25579445 aaataagcgtagaggagatgaggatgttgcgttggatgtgtggtaatacta-----gataggattagaaatgaccacattagagagagtggggagtagca 25579351  T
Q  342 cctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagatt 411  Q
    || || |||||||||||| || ||||||| ||||||||||||| | || |||||||||||| | ||||||    
T  25579350 cccatagcagaaaaaatggtggaaaataggcttaggtggtttggggatgtagagagaagacatgtagatt 25579281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 411
Target Start/End: Complemental strand, 19262788 - 19262637
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag--ttggggtaacacctatggcagaaaaaatg 359  Q
    ||||||||||| ||  |||| |||||||| |||| |   |||||  |||||||||| ||||||||||||  |||||||| ||||||| | |||||| |||    
T  19262788 atgaggatgttacgtgtgatatgtggtaatactagacatgatagagttagaaatgacaatattagagagagttggggtagcacctattgtagaaaagatg 19262689  T
Q  360 atgaaaaatagacttaggtggtttgagtatatagagagaagacctttagatt 411  Q
     |  ||| | | ||||||||||||||| || |||||||||||||| ||||||    
T  19262688 gtagaaacttggcttaggtggtttgagcatgtagagagaagacctgtagatt 19262637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 402
Target Start/End: Original strand, 47848599 - 47848743
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagag----agttggggtaacacctatggcagaaaaaa 357  Q
    |||||||||||| | | ||||||||||||||||| | | |||||||| |||| ||| || |||||||    |||||||||| | ||||| | |||||| |    
T  47848599 atgaggatgttgtgttggatgtgtggtaagactagacgggataggatcagaagtgataacattagagagagagttggggtagcgcctatagtagaaaaga 47848698  T
Q  358 tgatgaaaaatagacttaggtggtttgagtatatagagagaagac 402  Q
    || || ||||||| ||||||||||||| | || | ||||||||||    
T  47848699 tggtggaaaataggcttaggtggtttgggcatgtcgagagaagac 47848743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 420
Target Start/End: Original strand, 5335839 - 5336007
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagag--agttggggtaacacctatggcag 351  Q
    ||||||| |||||||||||||| |  |||||||||||||||| |    ||   ||||||||||| || |||||||  |||||||||| || |||| | ||    
T  5335839 tagcagagatgaggatgttgcgttgaatgtgtggtaagactagacagaatgcaattagaaatgataacattagagagagttggggtagcatctatagtag 5335938  T
Q  352 aaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagtta 420  Q
     ||| ||| |  ||| ||||||||||||||||| | |||||||||||||| || | |||| ||||||||    
T  5335939 gaaagatggtcgaaactagacttaggtggtttgggcatatagagagaagaactgtggattctgtagtta 5336007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 403
Target Start/End: Original strand, 37617861 - 37618015
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggc 349  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |  |||||||||||| ||||| |  |||    ||||||| |||||| ||||||| |     
T  37617861 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaagataggattaggaatgacaccattagagagagagtgggggtagcacctatagt 37617960  T
Q  350 agaaaaaatgat-gaaaaatagacttaggtggtttgagtatatagagagaagacc 403  Q
    ||||||  || | ||||||||| ||||| ||||||| | || |||||||||||||    
T  37617961 agaaaagttggtagaaaaataggcttagatggtttgggcatgtagagagaagacc 37618015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 25826806 - 25826759
Alignment:
Q  283 tgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||||||| ||| |||||||||||||||||||||| |||||||||    
T  25826806 tgtggtaagaccatacgagataggattagaaatgaaaacattagagag 25826759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 385
Target Start/End: Complemental strand, 27893864 - 27893778
Alignment:
Q  301 gataggattagaaatgaaaatattagagag--ttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttga 385  Q
    |||||||||||||| || ||||||||||||  ||| |||||||||||| | |||| | ||| || ||||||| ||||||||||||||    
T  27893864 gataggattagaaacgacaatattagagagagttgaggtaacacctatagtagaatagatggtggaaaataggcttaggtggtttga 27893778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 335
Target Start/End: Complemental strand, 28542257 - 28542168
Alignment:
Q  245 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggg 335  Q
    |||||||  |||| || |||||| ||||||| | |||||||||||||||||  || ||||| ||||||||||  |||||||||||||||||    
T  28542257 aaataagtgtagcggagatgagggtgttgcgttggatgtgtggtaagactag-tgggatagaattagaaatggcaatattagagagttggg 28542168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 403
Target Start/End: Original strand, 33072853 - 33073022
Alignment:
Q  236 atgaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttg 333  Q
    ||||| || |||||||  ||||||| |||| ||||||||| | |||| |||||||||||| |  |||||||||||| ||||| |  |||  ||||||| |    
T  33072853 atgagaatcaaataagtgtagcagagatgatgatgttgcgttggatgagtggtaagactagacaagataggattaggaatgacaccattagagagagtgg 33072952  T
Q  334 gggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 403  Q
    ||||| ||||||| | ||||||  || |  ||||||| ||||| || |||| | || |||||||||||||    
T  33072953 gggtagcacctatagtagaaaagttggtagaaaataggcttagatgatttgggcatgtagagagaagacc 33073022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 47796476 - 47796430
Alignment:
Q  281 tgtgtggtaagactatatgagataggattagaaatgaaaatattaga 327  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||||    
T  47796476 tgtgtggtaagactagatgggataggattagaaatgacaatattaga 47796430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 410
Target Start/End: Original strand, 36136756 - 36136841
Alignment:
Q  325 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagat 410  Q
    |||||||||||||| ||||||| | |||||| ||| |  ||||||| ||||||| ||||| | |||||||||||| |||| |||||    
T  36136756 agagagttggggtagcacctatagtagaaaagatggtagaaaatagtcttaggttgtttgggcatatagagagaatacctatagat 36136841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 418
Target Start/End: Original strand, 42187462 - 42187555
Alignment:
Q  325 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    ||||||| |||||| |||||||   |||||| ||| || ||||||| ||||||||||||| | || || ||||||| ||| |||||||||||||    
T  42187462 agagagtcggggtagcacctataatagaaaagatggtggaaaataggcttaggtggtttgggcatgtaaagagaaggcctgtagattatgtagt 42187555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 1740714 - 1740790
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||||||||||||| | ||||||| |||||||||  || | || |||||||||||| || |||||||||    
T  1740714 tagcagagatgaggatgttgcgttggatgtgtagtaagactaggtggggtaagattagaaatgagaacattagagag 1740790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 401
Target Start/End: Complemental strand, 27021982 - 27021906
Alignment:
Q  325 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaaga 401  Q
    |||||||||||||| ||||||| | ||||||  || |||||| ||| ||||||||||||| | || |||||||||||    
T  27021982 agagagttggggtagcacctatagtagaaaagttggtgaaaactaggcttaggtggtttgggcatgtagagagaaga 27021906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 416
Target Start/End: Complemental strand, 36102105 - 36101964
Alignment:
Q  279 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagag----agttggggtaacacctatggcagaaaaaatgatgaaaaatagactt 374  Q
    ||||||||||||||||| ||| |||  |||||||||||| || ||| |||    |||   |||| |||||||   |||||| ||| || ||||||| |||    
T  36102105 gatgtgtggtaagactagatgggatgagattagaaatgacaacatttgaggaagagtgaaggtagcacctataatagaaaagatgttggaaaataggctt 36102006  T
Q  375 aggtggtttgagtatatagagagaagacctttagattatgta 416  Q
    |||||||||| | || |||||||||||||| |||||| ||||    
T  36102005 aggtggtttggggatgtagagagaagacctatagattttgta 36101964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 403
Target Start/End: Original strand, 43281601 - 43281744
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcagaaaaaatg 359  Q
    |||||||||||||||| |||| |||||||||||| |  | |||||||||| ||||| |  |||  ||||||| |||||| ||||||| | ||||||  ||    
T  43281601 atgaggatgttgcgctggatgagtggtaagactagacaatataggattaggaatgacaccattagagagagtgggggtagcacctatagtagaaaagttg 43281700  T
Q  360 atgaaaaatagacttaggtggtttgagtatatagagagaagacc 403  Q
     |  ||||||| ||||| |||||||   || |||||||||||||    
T  43281701 gtagaaaataggcttagatggtttggacatgtagagagaagacc 43281744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 330
Target Start/End: Original strand, 35713621 - 35713672
Alignment:
Q  279 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    |||||||||||||  || ||  ||||||||||||||||||||||||||||||    
T  35713621 gatgtgtggtaaggttagatatgataggattagaaatgaaaatattagagag 35713672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 23404340 - 23404398
Alignment:
Q  259 gaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 317  Q
    ||||||||||||||||||| |||| | ||||||||||||   ||||||||||| |||||    
T  23404340 gaaatgaggatgttgcgctggatgagcggtaagactatacatgataggattaggaatga 23404398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 14593678 - 14593719
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagacta 295  Q
    ||||||| |||||||||||||| | |||||||||||||||||    
T  14593678 tagcagagatgaggatgttgcgttggatgtgtggtaagacta 14593719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 16013201 - 16013242
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagacta 295  Q
    ||||||| |||||||||||||| | |||||||||||||||||    
T  16013201 tagcagagatgaggatgttgcgttggatgtgtggtaagacta 16013242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 18605390 - 18605341
Alignment:
Q  371 acttaggtggtttgagtatatagagagaagacctttagattatgtagtta 420  Q
    |||||||||||||||| || |||||||||||| | |||||||| ||||||    
T  18605390 acttaggtggtttgagcatgtagagagaagacatgtagattatatagtta 18605341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 18637600 - 18637649
Alignment:
Q  371 acttaggtggtttgagtatatagagagaagacctttagattatgtagtta 420  Q
    |||||||||||||||| || |||||||||||| | |||||||| ||||||    
T  18637600 acttaggtggtttgagcatgtagagagaagacatgtagattatatagtta 18637649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 18651034 - 18651083
Alignment:
Q  371 acttaggtggtttgagtatatagagagaagacctttagattatgtagtta 420  Q
    |||||||||||||||| || |||||||||||| | |||||||| ||||||    
T  18651034 acttaggtggtttgagcatgtagagagaagacatgtagattatatagtta 18651083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 35906566 - 35906490
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  35906566 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgacaccattagagag 35906490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 45836837 - 45836769
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    |||||||||||||||| |||| ||||||||| || |  |||||||||||| ||||| |  |||||||||    
T  45836837 atgaggatgttgcgctggatgagtggtaagagtagacaagataggattaggaatgacaccattagagag 45836769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 384
Target Start/End: Complemental strand, 42510385 - 42510245
Alignment:
Q  245 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaa-tgaaaatattagagagttggggtaacacc 343  Q
    |||||||||||||||| |||||||||||||  | ||||||||||||||||| ||| |||||| ||||||| ||| |||| ||| |||||||| || ||||    
T  42510385 aaataagcatagcagagatgaggatgttgcattggatgtgtggtaagactagatgggataggtttagaaattgataatactagggagttgggatagcacc 42510286  T
Q  344 tatggcagaaaaaatgatgaaaaatagacttaggtggtttg 384  Q
    ||| | |||||| ||  || ||||||| |||||||||||||    
T  42510285 tatagtagaaaagatagtggaaaataggcttaggtggtttg 42510245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 410
Target Start/End: Original strand, 54128289 - 54128455
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagaga----gttggggtaacacc 343  Q
    ||||| ||||||| |||||||||||||| |||||| ||||||| |||| | | ||||||||||  ||||| |  ||||||||    ||||||||| ||||    
T  54128289 taagcttagcagagatgaggatgttgcgtttgatgagtggtaaaactagacgcgataggattatgaatgacaccattagagagagtgttggggtagcacc 54128388  T
Q  344 tatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagat 410  Q
    ||| | |||||| ||| |  ||||||| ||||||||||||| | || |||||| ||||||| |||||    
T  54128389 tatagtagaaaagatggtagaaaataggcttaggtggtttgggcatgtagagaaaagacctgtagat 54128455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 418
Target Start/End: Complemental strand, 2341088 - 2340911
Alignment:
Q  245 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag----ttggggtaac 340  Q
    ||||||| ||||  || |||||||||||||  | ||||||||||||||||| |   ||||| |||||||||||||| |||||||||    |||||||| |    
T  2341088 aaataaggatagtggagatgaggatgttgcattggatgtgtggtaagactagacatgatagaattagaaatgaaaacattagagagggtgttggggtagc 2340989  T
Q  341 acctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    |||  | | |||||| ||| || |||||   |||| |||||||||| || |||||| |||| || |||||||||||||    
T  2340988 accattcgtagaaaagatggtggaaaatcatcttacgtggtttgagcatgtagagaaaagatctatagattatgtagt 2340911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 22902751 - 22902799
Alignment:
Q  282 gtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  22902751 gtgtggtaacactatatgcgataggattagaaatgaaaatattagagag 22902799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 418
Target Start/End: Complemental strand, 36820309 - 36820158
Alignment:
Q  269 tgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcagaaaaaatgatgaaaa 366  Q
    ||||||| | ||||||||||||||||| | |||||||||||||||||||  | |||  |||||||||||||| |||||||   || ||| ||| || |||    
T  36820309 tgttgcgttggatgtgtggtaagactagacgagataggattagaaatgacgacattagagagagttggggtagcacctatattagcaaagatggtggaaa 36820210  T
Q  367 atagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
     ||| ||||||||||||    || || ||||||||||  |||||||||||||    
T  36820209 ctaggcttaggtggtttagacatgtaaagagaagacccatagattatgtagt 36820158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 398
Target Start/End: Complemental strand, 54365290 - 54365194
Alignment:
Q  303 taggattagaaatgaaaatattag--agagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagaga 398  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||| | |||||| |||  | ||||||| ||||||||||||| | || ||||||||    
T  54365290 taggattagaaatgaaaatattagagagagttggggtagcacctatagtagaaaatatggcggaaaatag-cttaggtggtttgggcatgtagagaga 54365194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 417
Target Start/End: Complemental strand, 39601020 - 39600879
Alignment:
Q  280 atgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagactta 375  Q
    |||||||||||||||| ||| |||| |||||||||||| || |||    ||||||||||||||  |||||| | |||||| ||| || |||| |  ||||    
T  39601020 atgtgtggtaagactagatgggataagattagaaatgacaacattagagagagagttggggtagtacctatagtagaaaagatggtggaaaacaagctta 39600921  T
Q  376 ggtggtttgagtatatagagagaagacctttagattatgtag 417  Q
    ||||||||  | || || ||||||||||| |||||| |||||    
T  39600920 ggtggttttggcatgtaaagagaagacctgtagattctgtag 39600879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 410
Target Start/End: Original strand, 52138696 - 52138877
Alignment:
Q  233 aagatgaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agag 328  Q
    |||||||| || || ||||  ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||    ||||    
T  52138696 aagatgagaatcaagtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagagag 52138795  T
Q  329 agttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagat 410  Q
    ||| |||||| ||||||| | ||||||  || |  ||||||| ||||| ||||||| | || |||||||||||||| |||||    
T  52138796 agtgggggtagcacctatagtagaaaagttggtagaaaataggcttagatggtttgggcatgtagagagaagacctgtagat 52138877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 45728063 - 45728126
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 317  Q
    ||||||| |||||||||||||||| |||| |||||||||| | | || ||||||||||||||||    
T  45728063 tagcagagatgaggatgttgcgctggatgagtggtaagacgagacgaaataggattagaaatga 45728126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 345082 - 345000
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    |||||||||| ||||| ||||||||  | | ||| ||||||||||||| | |||||||||||||||||||  | |||||||||    
T  345082 taagcatagcggaaattaggatgttatgttggatttgtggtaagactagacgagataggattagaaatgatgacattagagag 345000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 330
Target Start/End: Complemental strand, 23534952 - 23534858
Alignment:
Q  236 atgaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||| || |||||||| |||| || | |||||||||||| | ||||| || ||| |||| || ||||| |||||||||||| ||||||||||||    
T  23534952 atgagaataaaataagcgtagcggagaagaggatgttgcgttagatgtttgataaaactagatcagataagattagaaatgacaatattagagag 23534858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 384
Target Start/End: Complemental strand, 44134164 - 44134061
Alignment:
Q  279 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggt 378  Q
    |||||||| |||||||||  ||||| ||| ||||||| | || ||||| ||||||||||| | ||| | | |||||| ||| || |||||||||||||||    
T  44134164 gatgtgtgataagactat--gagatgggactagaaattacaacattagtgagttggggtagcgcctctagtagaaaagatggtggaaaatagacttaggt 44134067  T
Q  379 ggtttg 384  Q
    ||||||    
T  44134066 ggtttg 44134061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 404
Target Start/End: Complemental strand, 50960922 - 50960844
Alignment:
Q  326 gagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacct 404  Q
    ||||||||||||| ||||||| | |||||| ||| |  ||||||| ||||||||||||| | || ||||||||||||||    
T  50960922 gagagttggggtagcacctatagtagaaaagatggtagaaaataggcttaggtggtttgggcatgtagagagaagacct 50960844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 402
Target Start/End: Original strand, 3987039 - 3987116
Alignment:
Q  325 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagac 402  Q
    |||||||||||||| ||||||| | |||||| ||| |  ||| ||||||||||||||||| | || ||||||||||||    
T  3987039 agagagttggggtatcacctatagtagaaaagatggtagaaactagacttaggtggtttgggaatgtagagagaagac 3987116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 418
Target Start/End: Original strand, 46140349 - 46140517
Alignment:
Q  252 catagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattag--agagttggggtaacacctatggc 349  Q
    ||||||||| |||| ||||||||  |  |||| | ||||||||| | |  ||| |||||||| ||| ||||||||  ||||||||||||| || | | |     
T  46140349 catagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagt 46140448  T
Q  350 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    |||||| | | || ||| |||||| ||||||||||   ||||||||||||||||| |||||| ||||||    
T  46140449 agaaaagacggtggaaactagactcaggtggtttggacatatagagagaagacctgtagattctgtagt 46140517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 403
Target Start/End: Original strand, 25191296 - 25191447
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag--ttggggtaacacctatggcag 351  Q
    ||||||| |||||||||||||||| |||| |||||||||||| |   |||| |||||  ||||| |  |||||||||  | |||||| ||||||| | ||    
T  25191296 tagcagagatgaggatgttgcgctggatgagtggtaagactagacatgatatgattaagaatgacatcattagagagaatgggggtagcacctatagtag 25191395  T
Q  352 aaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 403  Q
    ||||| ||    ||||||||||||| |||||||   || |||||||||||||    
T  25191396 aaaaattggaagaaaatagacttagatggtttggacatgtagagagaagacc 25191447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 381
Target Start/End: Original strand, 50249289 - 50249432
Alignment:
Q  245 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagatag---gattagaaatgaaaatatt----agagagttggggt 337  Q
    ||||||||||||| || |||| |||||| || | ||||||||||| ||||| | |||||||   |||||||||||| || |||    |||||||||||||    
T  50249289 aaataagcatagcggagatgatgatgtttcgttggatgtgtggtaggactagacgagataggatgattagaaatgataacattagagagagagttggggt 50249388  T
Q  338 aacacctatggcagaaaaaatgatgaaaaatagacttaggtggt 381  Q
    | | | ||| | |||||| ||| || ||| ||||||||||||||    
T  50249389 agcgcgtatagtagaaaagatggtggaaactagacttaggtggt 50249432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 50621741 - 50621649
Alignment:
Q  238 gaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    |||||| |||||||  |||| || ||||| |||||||  ||||| ||||||||||||||    ||||||||||||||||| || |||||||||    
T  50621741 gaggataaaataagtgtagcggagatgagaatgttgcatttgatatgtggtaagactatgaatgataggattagaaatgacaacattagagag 50621649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 325
Target Start/End: Complemental strand, 48777555 - 48777509
Alignment:
Q  279 gatgtgtggtaagactatatgagataggattagaaatgaaaatatta 325  Q
    ||||||||||||||||| | |||||| ||||| ||||||||||||||    
T  48777555 gatgtgtggtaagactaaaagagatatgattaaaaatgaaaatatta 48777509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 30573040 - 30572995
Alignment:
Q  373 ttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    |||||||||||||  || |||||||||||||| |||||||||||||    
T  30573040 ttaggtggtttgatcatgtagagagaagacctatagattatgtagt 30572995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 418
Target Start/End: Complemental strand, 34719362 - 34719269
Alignment:
Q  325 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    |||||||||||||| ||||||| | |||||| ||| || ||| |  ||||||||| |||||  ||||||||||||| ||| | |||| ||||||    
T  34719362 agagagttggggtagcacctatcgtagaaaagatggtggaaagtcaacttaggtgttttgaacatatagagagaaggcctgttgattttgtagt 34719269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 2198836 - 2198876
Alignment:
Q  302 ataggattagaaatgaaaatattagagagttggggtaacac 342  Q
    ||||||||| |||||| ||||||||||||||| ||||||||    
T  2198836 ataggattaaaaatgacaatattagagagttgaggtaacac 2198876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 38054694 - 38054626
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||| |||||||| |  ||| |||||||||||| | | ||||||||||||||||| || |||||||||    
T  38054694 atgagaatgttgcgttgaatgggtggtaagactagacgggataggattagaaatgataacattagagag 38054626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 46568033 - 46568109
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||||||||||| | | |||||||| |||||||| |  |||| | ||||||||||| || |||||||||    
T  46568033 tagcagagatgaggatgttgtgttggatgtgtgttaagactagaccagattgaattagaaatgacaacattagagag 46568109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 51448074 - 51447998
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  51448074 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgacaccattagagag 51447998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 380
Target Start/End: Original strand, 55244245 - 55244345
Alignment:
Q  280 atgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtg 379  Q
    |||||||||||||||  | | |||| |||||| ||||| || ||||||||||||| | ||||||||| | |||||| ||| || |||  || ||||||||    
T  55244245 atgtgtggtaagacttgacgggataagattagtaatgacaacattagagagttggtgcaacacctatagtagaaaagatggtggaaacaaggcttaggtg 55244344  T
Q  380 g 380  Q
    |    
T  55244345 g 55244345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 250 - 384
Target Start/End: Complemental strand, 11002790 - 11002654
Alignment:
Q  250 agcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatg 347  Q
    ||||||||||| |||||||||||||||| ||||||||||||||| | ||| ||||| ||||||||||| || |||  |||||||| ||||| ||||||      
T  11002790 agcatagcagagatgaggatgttgcgctggatgtgtggtaagacgagatgggatagaattagaaatgacaacattagagagagttcgggtagcacctaca 11002691  T
Q  348 gcagaaaaaatgatgaaaaatagacttaggtggtttg 384  Q
    | |||||| ||| |  ||| |||||||||||||||||    
T  11002690 gtagaaaacatggtagaaactagacttaggtggtttg 11002654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 418
Target Start/End: Original strand, 9235011 - 9235149
Alignment:
Q  279 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggt 378  Q
    ||||||||||||||||| | | |||||||||| |||||| || ||||||||||||| | | || |||| | || |||||||| || || | |||||||||    
T  9235011 gatgtgtggtaagactagacgggataggattataaatgacaacattagagagttggagaagcatctatagtag-aaaaatgacgagaactcgacttaggt 9235109  T
Q  379 ggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    | |||||| || |||||||||||| | |||||| ||||||    
T  9235110 gttttgagcatgtagagagaagacttgtagattctgtagt 9235149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 418
Target Start/End: Original strand, 37124497 - 37124652
Alignment:
Q  265 aggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatta--gagagttggggtaacacctatggcagaaaaaatgatg 362  Q
    ||||||||||| ||| ||||| | ||||||| |||| ||   |||||||||||||| ||||  |||||| |||||| ||||||| |  ||||| ||||||    
T  37124497 aggatgttgcgtttggtgtgttgaaagactagatgaaatcatattagaaatgaaaaaattaaagagagtcggggtagcacctatagttgaaaagatgatg 37124596  T
Q  363 aaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
     ||||||| |||| ||  ||||||| | | |||||||||||| || ||||||||||    
T  37124597 gaaaataggcttaagtcatttgagtttgttgagagaagacctatatattatgtagt 37124652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 684032 - 683981
Alignment:
Q  279 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  684032 gatgtgtggtaagactagatgagatagaattagaaatgacaatattagagag 683981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 415
Target Start/End: Original strand, 6888935 - 6889075
Alignment:
Q  279 gatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagactt 374  Q
    ||||||||||||||||| |||||||| |||||||||||| ||||||    | |||||||||||| ||| ||| |  ||||| ||| || ||||||| |||    
T  6888935 gatgtgtggtaagactagatgagatatgattagaaatgacaatattacagaaagagttggggtagcacgtatagaggaaaagatggtggaaaataggctt 6889034  T
Q  375 aggtggtttgagtatatagagagaagacctttagattatgt 415  Q
    | ||||||||   || |||||||||||| | | ||||||||    
T  6889035 aagtggtttggacatgtagagagaagacttgtggattatgt 6889075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 41833907 - 41833793
Alignment:
Q  292 actatatgagataggattagaaatgaaaatattagagagttggggtaacacctatgg--cagaaaaaatgatgaaaaatagacttaggtggtttgagtat 389  Q
    |||||||| ||||||||||| ||||  |||||||||||||||||||| |||||||||   |||||| ||| || || |||  ||||||||||||| | ||    
T  41833907 actatatgggataggattaggaatgttaatattagagagttggggtagcacctatggtatagaaaagatggtggaacatatgcttaggtggtttgggcat 41833808  T
Q  390 atagagagaagacct 404  Q
     |||||| |||||||    
T  41833807 gtagagacaagacct 41833793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 414
Target Start/End: Original strand, 33667188 - 33667297
Alignment:
Q  307 attagaaatgaaaatatta--gagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacct 404  Q
    ||||||||||| || ||||  ||||||||||||| ||||||| | |||||| ||| |  ||| ||||||||||||||||| | || ||||||||||||||    
T  33667188 attagaaatgacaacattaacgagagttggggtagcacctatagtagaaaagatggtagaaactagacttaggtggtttgggcatgtagagagaagacct 33667287  T
Q  405 ttagattatg 414  Q
     | |||||||    
T  33667288 gtggattatg 33667297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 402
Target Start/End: Complemental strand, 10083109 - 10082952
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag----ttggggtaacacc 343  Q
    ||||| ||||||  |||||||||||||  ||||||||||||||||||| | | ||||| ||||||||||| || ||||| |||    |||||||| ||||    
T  10083109 taagcgtagcagggatgaggatgttgct-ttgatgtgtggtaagactagacgggatagaattagaaatgagaacattagggagagcattggggtatcacc 10083011  T
Q  344 tatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagac 402  Q
    ||| | |||||| ||| |  ||| |||||||| |||||||  | || ||||||||||||    
T  10083010 tatagtagaaaagatggtagaaactagacttaagtggtttcggcatgtagagagaagac 10082952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 418
Target Start/End: Original strand, 30588381 - 30588534
Alignment:
Q  265 aggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaa 364  Q
    |||||||||||   ||||||||||||||  | |||||||| |||||||||||| |||||||||||||| | ||||||  |||   |||||| ||| || |    
T  30588381 aggatgttgcgtgggatgtgtggtaagatcaaatgagatatgattagaaatgacaatattagagagttagagtaacatgtataatagaaaagatggtgga 30588480  T
Q  365 aaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    ||||||  ||| |||||||| | ||||   |||||||| | |||||| ||||||    
T  30588481 aaataggtttaagtggtttgggcatattcggagaagacttgtagattctgtagt 30588534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 384
Target Start/End: Original strand, 14667699 - 14667814
Alignment:
Q  279 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagag----------agttggggtaacacctatggcagaaaaaatgatgaaaaat 368  Q
    |||||||| |||||||| ||||| ||| ||||||||||| ||||||||||          |||||||||| ||||||| | |||||| ||| || |||||    
T  14667699 gatgtgtgataagactagatgaggtagaattagaaatgacaatattagagagagagagagagttggggtagcacctatagtagaaaagatggtggaaaat 14667798  T
Q  369 agacttaggtggtttg 384  Q
    ||||||||||||||||    
T  14667799 agacttaggtggtttg 14667814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 329
Target Start/End: Original strand, 21093701 - 21093768
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagaga 329  Q
    |||||||||||||| |  |||||||||||||||| ||| ||| | ||||||||||| |||||||||||    
T  21093701 atgaggatgttgcgttgtatgtgtggtaagactagatgtgatggaattagaaatgacaatattagaga 21093768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 415
Target Start/End: Original strand, 28676562 - 28676677
Alignment:
Q  300 agataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaa 399  Q
    ||||| |||||||||| | || | || |||||| ||||| || |||| | |||||| ||| || ||||||| ||||||||||||  | || |||||||||    
T  28676562 agatatgattagaaataacaacaatatagagttcgggtagcagctatagtagaaaagatggtggaaaatagtcttaggtggtttcggcatgtagagagaa 28676661  T
Q  400 gacctttagattatgt 415  Q
    |||||||| |||||||    
T  28676662 gacctttaaattatgt 28676677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 401
Target Start/End: Original strand, 1275176 - 1275332
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag---ttggggtaacacct 344  Q
    ||||||||||||| |||||||||||||| | |||| |||||||||||| |   | ||||||||| ||||| |  |||||||||    ||||||| |||||    
T  1275176 taagcatagcagagatgaggatgttgcgttggatgagtggtaagactagacatggtaggattaggaatgacaccattagagagagagtggggtagcacct 1275275  T
Q  345 atggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaaga 401  Q
    || | ||||||  || |  ||||||| ||||| ||||||| | || |||||||||||    
T  1275276 atagtagaaaagttggtagaaaataggcttagatggtttgggcatgtagagagaaga 1275332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 404
Target Start/End: Original strand, 14749267 - 14749378
Alignment:
Q  297 atgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatata 392  Q
    |||||||||||||||||||||||| |||    |||||||||| ||| ||||||| | ||||||| || |  ||| ||||||||| |||||||   || ||    
T  14749267 atgagataggattagaaatgaaaacattagagagagagttggtgtagcacctatagtagaaaaattggtagaaactagacttagatggtttggacatgta 14749366  T
Q  393 gagagaagacct 404  Q
    ||||||||||||    
T  14749367 gagagaagacct 14749378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 16134550 - 16134481
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 317  Q
    |||| |||||| |||||||||||||| | | ||||| ||||||||||| ||||||||  |||||||||||    
T  16134550 taagtatagcataaatgaggatgttgtgttggatgtatggtaagactagatgagataaaattagaaatga 16134481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 2075839 - 2075763
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||||||||||||| | |||| || ||||||||| |  |||||||||||| ||||| || |||||||||    
T  2075839 tagcagagatgaggatgttgcgttggatgagttgtaagactagacaagataggattaggaatgacaacattagagag 2075763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 6368283 - 6368227
Alignment:
Q  261 aatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 317  Q
    ||||||||||||||| | |||||||||||||| || | ||||||| |||||||||||    
T  6368283 aatgaggatgttgcgttagatgtgtggtaagaatagacgagatagaattagaaatga 6368227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 27998329 - 27998381
Alignment:
Q  243 tgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagacta 295  Q
    |||| |||||||| |||| |||||||||||||| | |||||||||||||||||    
T  27998329 tgaattaagcatatcagagatgaggatgttgcgttggatgtgtggtaagacta 27998381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 383
Target Start/End: Original strand, 32516483 - 32516606
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag--ttggggtaacacctatggcagaaaaaatg 359  Q
    |||| ||||||| | | ||||||||||||||||| |   |||||  |||||||||| || |||||||||  |||| ||||||| ||| | |||||| |||    
T  32516483 atgatgatgttgtgttggatgtgtggtaagactagacaggatagacttagaaatgacaacattagagagagttggagtaacacttatagtagaaaagatg 32516582  T
Q  360 atgaaaaatagacttaggtggttt 383  Q
     || ||||||| ||||||||||||    
T  32516583 gtggaaaataggcttaggtggttt 32516606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 386
Target Start/End: Original strand, 27887 - 27946
Alignment:
Q  327 agagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgag 386  Q
    |||||| ||||| ||||||| | |||||| |||||| ||||||| |||||||||||||||    
T  27887 agagttagggtagcacctatagtagaaaagatgatggaaaataggcttaggtggtttgag 27946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 21952276 - 21952331
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 317  Q
    |||||||||||||| |  |||||||||||||||| | |||||| ||||||||||||    
T  21952276 atgaggatgttgcgttgcatgtgtggtaagactagacgagataagattagaaatga 21952331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 403
Target Start/End: Complemental strand, 31636254 - 31636132
Alignment:
Q  283 tgtggtaagactatatgagataggattagaaatgaaaatattagaga--gttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtgg 380  Q
    ||||||||||||| |   ||||| |||| |||||| |  ||||||||  ||||||||| ||||||| | |||||| ||| |  ||| |||||||||||||    
T  31636254 tgtggtaagactagactggatagaattataaatgacagcattagagaaagttggggtagcacctatagtagaaaagatggtagaaactagacttaggtgg 31636155  T
Q  381 tttgagtatatagagagaagacc 403  Q
    |||| | || |||||||||||||    
T  31636154 tttgggcatgtagagagaagacc 31636132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 7678405 - 7678471
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagag 328  Q
    |||||||||||||| | ||| ||||| ||||||| ||  ||||||||||||||||| || |||||||    
T  7678405 atgaggatgttgcgttggatctgtggcaagactagataggataggattagaaatgacaacattagag 7678471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 418
Target Start/End: Original strand, 79505 - 79598
Alignment:
Q  325 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    ||||||||||||||  |||||| | |||||| ||| || |||| | | ||||||||||||   || |||||||||||||| |||||| ||||||    
T  79505 agagagttggggtagtacctatagtagaaaagatggtggaaaacataattaggtggtttggacatgtagagagaagacctatagattctgtagt 79598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 5305524 - 5305609
Alignment:
Q  245 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||||| | | | |||||||||| | ||||||||||||||||| |  |||||| ||||||||| | || |||||||||    
T  5305524 aaataagaatagcaaagacggggatgttgcgttggatgtgtggtaagactagacaagatagaattagaaataacaacattagagag 5305609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 28187042 - 28186957
Alignment:
Q  245 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||||| | |||| ||||| |||||||  | ||||||||||||||||| |   | ||||||||||||||| || |||||||||    
T  28187042 aaataagcacatcagagatgagaatgttgcattggatgtgtggtaagactagacatggtaggattagaaatgacaacattagagag 28186957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 411
Target Start/End: Original strand, 29938132 - 29938193
Alignment:
Q  350 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagatt 411  Q
    |||||| ||| || ||||||| |||||||||||| ||  |||||||||||||||| ||||||    
T  29938132 agaaaagatggtggaaaataggcttaggtggtttaagcctatagagagaagacctgtagatt 29938193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 38341760 - 38341723
Alignment:
Q  280 atgtgtggtaagactatatgagataggattagaaatga 317  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  38341760 atgtgtggtaagactatacgagataggtttagaaatga 38341723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 41110115 - 41110030
Alignment:
Q  245 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    |||||||| ||||| | ||||  |||||||||| ||||||| || |||||| |||  |||||||||||||||| || | |||||||    
T  41110115 aaataagcgtagcaaagatgaaaatgttgcgctggatgtgtagtgagactagatggaataggattagaaatgacaacactagagag 41110030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 1287954 - 1287878
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  1287954 tagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacatcattagagag 1287878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 418
Target Start/End: Complemental strand, 7359593 - 7359457
Alignment:
Q  285 tggtaagactatatgagataggattagaaatgaaaatattagagag----ttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtgg 380  Q
    ||||||||||  | ||||||| ||||||||||| ||| ||||||||    ||  |||||||||||| | |||||| ||| || |||||||  ||||||||    
T  7359593 tggtaagactggacgagatagaattagaaatgacaatgttagagagagagttcaggtaacacctatagtagaaaatatggtggaaaataggtttaggtgg 7359494  T
Q  381 tttgagtatatagagagaagacctttagattatgtagt 418  Q
    |||| | || |||||||||||  | |||||| ||||||    
T  7359493 tttg-gcatgtagagagaagatatgtagattctgtagt 7359457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 24178427 - 24178483
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggatta 310  Q
    ||||||| |||||||||||||| | |||| ||||||||||||||   ||||||||||    
T  24178427 tagcagagatgaggatgttgcgttggatgagtggtaagactatacatgataggatta 24178483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 346
Target Start/End: Complemental strand, 34194850 - 34194767
Alignment:
Q  265 aggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctat 346  Q
    ||||||||| | | |||||||||||| |||| |   |||||||||||||||| ||| |||  ||||||||||| ||||||||||    
T  34194850 aggatgttgtgttggatgtgtggtaaaactagacaggataggattagaaatgtaaacattagagagagttgggataacacctat 34194767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 418
Target Start/End: Original strand, 42199303 - 42199371
Alignment:
Q  350 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    |||||| ||| || ||| ||||||||||||||||| | || |||||||||||| | |||||| ||||||    
T  42199303 agaaaagatggtggaaactagacttaggtggtttgggcatgtagagagaagacatgtagattctgtagt 42199371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 411
Target Start/End: Original strand, 1661334 - 1661508
Alignment:
Q  245 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaa----aatatt----agagagttgggg 336  Q
    |||||||||||||||| |||| ||||||| | |  |||| || |||||||| ||| ||||||||||||||||||    ||||||    ||||||||||||    
T  1661334 aaataagcatagcagagatgaagatgttgtgttgaatgtctgataagactagatgtgataggattagaaatgaatgacaatatttgagagagagttgggg 1661433  T
Q  337 taacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagatt 411  Q
    || ||||||| | |||||| ||| || ||||||| || || ||||||||| || |||||||||||||| ||||||    
T  1661434 tagcacctatagtagaaaagatggtggaaaataggctcagatggtttgagcatgtagagagaagacctatagatt 1661508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 420
Target Start/End: Complemental strand, 39422412 - 39422238
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt---agagagttggggtaacacct 344  Q
    ||||| |||| |||||||| |||||| | | ||||||||||| || |||||||||||| ||||||||||| ||||||   |||||||||| ||||||| |    
T  39422412 taagcgtagctgaaatgagaatgttgtgttagatgtgtggtaggattatatgagatagaattagaaatgacaatattagaagagagttggagtaacacat 39422313  T
Q  345 atggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagtta 420  Q
    || | |||||| ||  |  ||| |||||||||||| || ||  || |||||||||||| | |||||||||||||||    
T  39422312 atagtagaaaagatagtagaaactagacttaggtgcttgga-catgtagagagaagacatgtagattatgtagtta 39422238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 267 - 394
Target Start/End: Original strand, 35672618 - 35672745
Alignment:
Q  267 gatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaa 366  Q
    ||||||||  || ||||||||||| |||| |||||||||||||||||||||  | || | || ||||||||| ||||||| | |||||| | ||||| ||    
T  35672618 gatgttgcatttaatgtgtggtaaaactagatgagataggattagaaatgaccacataatagtgttggggtagcacctatagtagaaaagacgatgagaa 35672717  T
Q  367 atagacttaggtggtttgagtatataga 394  Q
    ||||  |||||||||||| | |||||||    
T  35672718 atagttttaggtggtttgggcatataga 35672745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 418
Target Start/End: Original strand, 43423711 - 43423804
Alignment:
Q  325 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    |||||||||||||||||||||| | |||||| ||| || ||| ||| |||||||||||||   || |||||||||||| | |||||||||||||    
T  43423711 agagagttggggtaacacctatagtagaaaagatggtggaaactaggcttaggtggtttggccatgtagagagaagacttgtagattatgtagt 43423804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 336 - 416
Target Start/End: Original strand, 52837528 - 52837608
Alignment:
Q  336 gtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgta 416  Q
    ||||||||||| | |||| ||||| || ||||||||||||||  |||||||||| |||||||||||||| |||||| ||||    
T  52837528 gtaacacctattgtagaataaatggtggaaaatagacttagggagtttgagtatgtagagagaagacctatagattgtgta 52837608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 418
Target Start/End: Complemental strand, 35828887 - 35828747
Alignment:
Q  282 gtgtggtaagactatatgagataggattagaaatgaaaatattagagag----ttggggtaacacctatggcagaaaaaatgatgaaaaatagacttagg 377  Q
    ||||| ||||||||  || |||| |||||||||||| ||||||||||||    || | ||| ||||||||| |||||| ||| || |||||||  |||||    
T  35828887 gtgtgataagactaggtgtgataagattagaaatgacaatattagagagagagtttgagtagcacctatggtagaaaagatggtggaaaatagggttagg 35828788  T
Q  378 tggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    |||||||    | |||||||||||||| |||||||||||||    
T  35828787 tggtttggacgtgtagagagaagacctatagattatgtagt 35828747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 411
Target Start/End: Original strand, 2544591 - 2544677
Alignment:
Q  325 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagatt 411  Q
    |||||||||||||| ||||||| | |||||| ||| || |||| ||||||||||||||||   || |||||||||||||| ||||||    
T  2544591 agagagttggggtagcacctatagtagaaaagatggtggaaaacagacttaggtggtttggacatgtagagagaagacctatagatt 2544677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 338
Target Start/End: Complemental strand, 4590879 - 4590805
Alignment:
Q  264 gaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggta 338  Q
    |||||||||||| |  ||||| ||| |||||| |  |||||||||||||||||| ||||||||||||||||||||    
T  4590879 gaggatgttgcgttgaatgtgcggtgagactagacaagataggattagaaatgacaatattagagagttggggta 4590805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 403
Target Start/End: Original strand, 9509229 - 9509388
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacc 343  Q
    ||||| ||||||| |||||||||||| | | |||| ||| |||||||| |   |||| |||||||||||| |  |||    |||||||||||||| ||||    
T  9509229 taagcgtagcagagatgaggatgttgtgttggatgagtgataagactagacaggatatgattagaaatgacaccattagagagagagttggggtagcacc 9509328  T
Q  344 tatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 403  Q
    ||| | |||||| ||| | |||||||| ||||||| ||||| | || |||||||||||||    
T  9509329 tatagtagaaaagatggtaaaaaataggcttaggtagtttgggcatgtagagagaagacc 9509388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 355
Target Start/End: Original strand, 12135655 - 12135747
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaa 355  Q
    |||||||||||||||| ||| ||||||||||||| | || ||||||||||||| ||  | |||||||||||||| | |||||||| | ||||||    
T  12135655 atgaggatgttgcgctggatatgtggtaagactaaacga-ataggattagaaacgacgacattagagagttgggatcacacctatagtagaaaa 12135747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 403
Target Start/End: Original strand, 39140468 - 39140590
Alignment:
Q  285 tggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtgg 380  Q
    ||||||||||| ||||||||||||||| |||||||  |||    |||||||||| ||| ||||||| | |||||| |||   |||||| | |||||||||    
T  39140468 tggtaagactagatgagataggattaggaatgaaaccattacagagagagttggcgtagcacctatagtagaaaagatggcaaaaaattggcttaggtgg 39140567  T
Q  381 tttgagtatatagagagaagacc 403  Q
    |||| | || |||||||||||||    
T  39140568 tttgggcatgtagagagaagacc 39140590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 34792714 - 34792638
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||||||||||||||| |||| |||||||||||| |   ||||||||||| |||||||  |||||||||    
T  34792714 tagcagagatgaggatgttgcgctggatgagtggtaagactagacatgataggattaggaatgaaaccattagagag 34792638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 16822379 - 16822312
Alignment:
Q  259 gaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattag 326  Q
    ||||||||||||||| | | |||||||||||| |||| || |||||||||||||||||| | ||||||    
T  16822379 gaaatgaggatgttgtgttggatgtgtggtaatactagataagataggattagaaatgacagtattag 16822312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 385
Target Start/End: Original strand, 6641049 - 6641181
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga--aaatattagagagttggggtaacacctatggcag 351  Q
    |||||||||||| ||||||||| | ||||||||||| ||||| |||  |||| |||||||||||  | |||  |||||||| || ||||||| || | ||    
T  6641049 tagcagaaatgatgatgttgcgttggatgtgtggtatgactagatggcatagaattagaaatgatgatataggagagagtt-ggataacaccaatagtag 6641147  T
Q  352 aaaaaatgatgaaaaatagacttaggtggtttga 385  Q
    | || |||||  ||| ||||||||||||||||||    
T  6641148 agaagatgatagaaattagacttaggtggtttga 6641181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 52442875 - 52442793
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||| ||||||| |||||||||||| | | ||||||||||||||||| |  ||||| |||||||||||| || ||| |||||    
T  52442875 taagcgtagcagacatgaggatgttgtgttggatgtgtggtaagactagacaagataagattagaaatgagaacattggagag 52442793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 4379917 - 4379998
Alignment:
Q  249 aagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    |||| |||| || |||||||||||| | | ||||||||||||||||| |  ||||| |||||||||||| || |||||||||    
T  4379917 aagcttagctgagatgaggatgttgtgttggatgtgtggtaagactagaaaagatatgattagaaatgacaacattagagag 4379998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 382
Target Start/End: Complemental strand, 9599765 - 9599627
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacc 343  Q
    ||||| ||||||| |||||||||||| | | |||| |||||||||||| | | |||| |||||| ||||| |  |||    |||||||||| ||||||||    
T  9599765 taagcgtagcagagatgaggatgttgtgttggatgagtggtaagactagacgggatatgattaggaatgacatcattagagagagagttggagtaacacc 9599666  T
Q  344 tatggcagaaaaaatgatgaaaaatagacttaggtggtt 382  Q
    ||| | |||||| ||| |  ||||||| |||||||||||    
T  9599665 tatagtagaaaagatggtagaaaataggcttaggtggtt 9599627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 418
Target Start/End: Complemental strand, 14226198 - 14226026
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacaccta 345  Q
    ||||||||||||| | |||||| ||| | | ||||||||||||| ||| |   ||||||||||||||||  || |||  |||||||||  ||| ||||||    
T  14226198 taagcatagcagatacgaggattttgtgttggatgtgtggtaaggctagacatgataggattagaaatggcaacattggagagagttgcagtagcaccta 14226099  T
Q  346 tggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    |   |||||| ||| || ||||||| ||||||||||||| | || ||||||| |  ||| |||||| ||||||    
T  14226098 tcatagaaaagatggtggaaaataggcttaggtggtttgggcatgtagagaggattcctgtagattttgtagt 14226026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 411
Target Start/End: Complemental strand, 32404807 - 32404730
Alignment:
Q  334 gggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagatt 411  Q
    ||||||||||||| | | |||| ||| || ||||||| |||||||||||||  ||| |||||||||||||| ||||||    
T  32404807 gggtaacacctatagtaaaaaagatggtggaaaataggcttaggtggtttggatatgtagagagaagacctgtagatt 32404730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 403
Target Start/End: Original strand, 1210662 - 1210815
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggc 349  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||    ||||||| |||||| ||||||| |     
T  1210662 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgacaccattagagagagagtgggggtagcacctatagt 1210761  T
Q  350 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 403  Q
    ||||||  || |  ||||||| ||||| ||||||| | || |||||||||||||    
T  1210762 agaaaagttggtagaaaataggcttagatggtttgggcatgtagagagaagacc 1210815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 40419556 - 40419632
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| ||||||||| |||| |  |||| |||||| |||| ||||||||| ||||||||||| || |||||||||    
T  40419556 tagcagagatgaggatggtgcgttgaatgtatggtaaaactagatgagatagaattagaaatgacaacattagagag 40419632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 40920894 - 40920826
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    |||| ||||||||  | |||||||||||||| || | ||||||||||||||||| | ||||||||||||    
T  40920894 atgaagatgttgcattggatgtgtggtaagattagacgagataggattagaaattacaatattagagag 40920826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 26016348 - 26016395
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagacta 295  Q
    ||||| ||||||| |||||||||||||| | |||||||||||||||||    
T  26016348 taagcgtagcagagatgaggatgttgcgttggatgtgtggtaagacta 26016395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 404
Target Start/End: Original strand, 26016429 - 26016508
Alignment:
Q  325 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacct 404  Q
    ||||||||||||||||||||||   |||||| ||| |  ||| |||| |||||||||||| |||| |||| |||||||||    
T  26016429 agagagttggggtaacacctatatgagaaaagatggtagaaactagatttaggtggtttgggtatgtagaaagaagacct 26016508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 402
Target Start/End: Complemental strand, 32231311 - 32231167
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaaaaa 357  Q
    |||||||||||||||| |||| ||||||||| || |   ||||||||||| ||||| |  |||    ||||||| |||||| ||||||| | |||||||     
T  32231311 atgaggatgttgcgctagatgagtggtaagattagacatgataggattaggaatgacaccattagagagagagtgggggtagcacctatagtagaaaaat 32231212  T
Q  358 tgatgaaaaatagacttaggtggtttgagtatatagagagaagac 402  Q
    || |  ||||||| ||||| ||||||| | || ||||||||||||    
T  32231211 tggtagaaaataggcttagatggtttgggcatgtagagagaagac 32231167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 401
Target Start/End: Original strand, 8671837 - 8671986
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcag 351  Q
    ||||||| || ||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||  ||||||| |||||| ||||||| | ||    
T  8671837 tagcagagataaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagagagtgggggtagcacctatagtag 8671936  T
Q  352 aaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaaga 401  Q
    ||||  || |  ||||||| ||||| ||||||| | || |||||||||||    
T  8671937 aaaagttggtagaaaataggcttagatggtttgggcatgtagagagaaga 8671986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 403
Target Start/End: Complemental strand, 43240669 - 43240591
Alignment:
Q  325 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 403  Q
    ||||||| |||||| ||||||| | ||||||| ||||  ||||||| ||||| | ||||||| || |||||||||||||    
T  43240669 agagagtgggggtagcacctatagtagaaaaattgatagaaaataggcttagatagtttgagcatgtagagagaagacc 43240591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 418
Target Start/End: Complemental strand, 48431689 - 48431603
Alignment:
Q  332 tggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    ||||||| | ||||| | |||||| ||| || ||||||| ||||||||||||| | || |||||||||||| | |||||| ||||||    
T  48431689 tggggtagcccctatagtagaaaagatggtggaaaataggcttaggtggtttgggcatgtagagagaagacttgtagattttgtagt 48431603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 16273171 - 16273122
Alignment:
Q  268 atgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 317  Q
    |||||||| | ||||||||||||||||| |||||||  ||||||||||||    
T  16273171 atgttgcgttggatgtgtggtaagactagatgagatgagattagaaatga 16273122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 19936421 - 19936502
Alignment:
Q  236 atgaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 317  Q
    ||||| || ||||||||||||| || ||||| |||||| | | |||| |||||||||||| ||| ||||||| ||| |||||    
T  19936421 atgagaatcaaataagcatagcggagatgagaatgttgtgttggatgagtggtaagactagatgggataggaataggaatga 19936502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 696194 - 696262
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    |||||||||||||||| |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  696194 atgaggatgttgcgctggatgagtggtaagactagacaggataggattaggaatgacaccattagagag 696262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 4001812 - 4001744
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    |||||||||||||||| |||| |||||||||||| |  | |||||||||| ||||| |  |||||||||    
T  4001812 atgaggatgttgcgctagatgagtggtaagactagacaaaataggattaggaatgacaccattagagag 4001744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 9592651 - 9592727
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  9592651 tagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagag 9592727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 15085859 - 15085927
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    |||||||||||||||| || | |||||||||||| ||  ||||||||||| ||||| |  |||||||||    
T  15085859 atgaggatgttgcgctggacgagtggtaagactagataggataggattaggaatgacaccattagagag 15085927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 30202495 - 30202419
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  30202495 tagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagag 30202419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 403
Target Start/End: Complemental strand, 51441130 - 51440977
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggc 349  Q
    ||||||| |||||||||||||  | || | |||||||||||| |   ||||||||||| ||||| |  |||    ||||||| |||||||||||||| |     
T  51441130 tagcagagatgaggatgttgcattggacgagtggtaagactagacatgataggattaggaatgacaccattagagagagagtgggggtaacacctatagt 51441031  T
Q  350 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 403  Q
    ||||||  || |  ||||||| ||||| ||||||| | || |||||||||||||    
T  51441030 agaaaagttggtagaaaataggcttagatggtttgggcatgtagagagaagacc 51440977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 17900391 - 17900564
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattaga----gagttggggtaacacc 343  Q
    ||||| |||||||||||||||||||||| | ||||||||||||||||| ||| ||||  |||||||||||  | ||||||    ||||||||||| ||||    
T  17900391 taagcgtagcagaaatgaggatgttgcgttggatgtgtggtaagactagatgggataaaattagaaatgacgacattagagacggagttggggtagcacc 17900490  T
Q  344 tatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtag 417  Q
    ||| | |||||| | | |  ||| |||||| | |||||||| | |  |||||||||||||| | ||||||||||    
T  17900491 tatagtagaaaagacggtagaaactagactcatgtggtttgggcacgtagagagaagacctgtggattatgtag 17900564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 262 - 418
Target Start/End: Original strand, 54470132 - 54470292
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaaaaa 357  Q
    |||||||||||||  | ||||||||||||||||| ||| |||| |||| ||||| | || |||    |||||||||||||| ||||||| | |||||| |    
T  54470132 atgaggatgttgcattggatgtgtggtaagactagatgggatatgatttgaaataacaacattagagagagagttggggtagcacctatagtagaaaaga 54470231  T
Q  358 tgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    || || ||| |||||||| |||||||| | || |||||||||||| | || ||||||||||    
T  54470232 tggtggaaactagacttaagtggtttgggcatgtagagagaagacatgtaaattatgtagt 54470292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 411
Target Start/End: Original strand, 50662298 - 50662466
Alignment:
Q  246 aataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacc 343  Q
    ||||||| |||| || | |||||||||| |   ||||||||||||||||||||||||||||||| ||||||| |  |||  |||||||| ||| ||||||    
T  50662298 aataagcgtagcggagacgaggatgttgtgtaggatgtgtggtaagactatatgagataggattggaaatgacagcattagagagagtttgggcaacacc 50662397  T
Q  344 tatggcagaaaaaatgatgaaaaatagacttaggtgg-tttgagtatatagagagaagacctttagatt 411  Q
    ||| | |||||| ||| || ||| ||| ||||||||| |||| | || |||||||||||| | ||||||    
T  50662398 tatagtagaaaagatggtggaaagtaggcttaggtggttttgggcatgtagagagaagacttgtagatt 50662466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 404
Target Start/End: Original strand, 10208980 - 10209105
Alignment:
Q  279 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggt 378  Q
    ||||||||||||||||| ||| ||||| ||||||||||| || |||||||||||||||||  |||||| | |||||| |||    ||| || |||||| |    
T  10208980 gatgtgtggtaagactagatgggatagaattagaaatgacaacattagagagttggggtagaacctatagtagaaaagatggcagaaactaaacttagtt 10209079  T
Q  379 ggtttgagtatatagagagaagacct 404  Q
    |||||| | || ||| ||||||||||    
T  10209080 ggtttgggcatgtagcgagaagacct 10209105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 279 - 346
Target Start/End: Original strand, 20998954 - 20999025
Alignment:
Q  279 gatgtgtggtaagactatatgagataggattagaaatgaaaatattaga----gagttggggtaacacctat 346  Q
    ||||||| ||||||||| | ||||||||||||||||||| |||||||||    |||||||||||||||||||    
T  20998954 gatgtgttgtaagactagacgagataggattagaaatgataatattagatagggagttggggtaacacctat 20999025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 279 - 402
Target Start/End: Complemental strand, 51252799 - 51252674
Alignment:
Q  279 gatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttag 376  Q
    ||||||| ||||||||| | |||||||||||||||||||  | |||  |||||||||||||| ||||| | | |||||| ||| || ||| ||| |||||    
T  51252799 gatgtgtcgtaagactagacgagataggattagaaatgactacattagagagagttggggtagcacctctagtagaaaagatggtggaaactaggcttag 51252700  T
Q  377 gtggtttgagtatatagagagaagac 402  Q
    ||||| || | || ||||||||||||    
T  51252699 gtggtatgggcatgtagagagaagac 51252674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 418
Target Start/End: Original strand, 29398718 - 29398903
Alignment:
Q  236 atgaggatgaaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattag----agagt 331  Q
    ||||| || |||||||  |||| || |||||||||||||  | ||| |||||||||| || |||  || |||||| |||||| ||||||||    |||||    
T  29398718 atgagaataaaataagtgtagcggagatgaggatgttgct-tggatttgtggtaagattagatggaattggattacaaatgacaatattagggaaagagt 29398816  T
Q  332 tggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    || | || ||||||||| |||||| ||| || ||||||  |||| |||||||| | || |||||||||||||| |||||| ||||||    
T  29398817 tgcgatagcacctatggtagaaaagatggtggaaaatatgcttatgtggtttgggcatgtagagagaagacctatagattctgtagt 29398903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 418
Target Start/End: Original strand, 41192828 - 41192921
Alignment:
Q  325 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    |||||||||||||| ||||||  | |||||| ||| || ||| |||||||||||| |||| | || |||||||||||||| |||||| ||||||    
T  41192828 agagagttggggtagcacctacagtagaaaagatggtggaaactagacttaggtgatttgtgcatgtagagagaagacctgtagattctgtagt 41192921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 326
Target Start/End: Original strand, 2588906 - 2588970
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattag 326  Q
    |||||||||||||| | ||||||||||||||||| | | ||||||||||||||||| || |||||    
T  2588906 atgaggatgttgcgttggatgtgtggtaagactagaagggataggattagaaatgacaacattag 2588970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 403
Target Start/End: Complemental strand, 33191213 - 33191060
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggc 349  Q
    ||||||| |||||||||||||||| |||| ||||||||| || ||  ||||||||||| ||||| |  |||    ||||||| |||||| ||||||| |     
T  33191213 tagcagagatgaggatgttgcgctggatgagtggtaagattagataggataggattaggaatgacaccattagagagagagtgggggtagcacctatagt 33191114  T
Q  350 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 403  Q
    ||||||  || |  ||||||||||||| | ||||| | || |||||||||||||    
T  33191113 agaaaagttggtagaaaatagacttagattgtttgggcatgtagagagaagacc 33191060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 329
Target Start/End: Complemental strand, 20105828 - 20105761
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagaga 329  Q
    |||| ||||||||| | ||||||||||||||||| | |||||| |||||||||||| || ||||||||    
T  20105828 atgatgatgttgcgatggatgtgtggtaagactagacgagatatgattagaaatgacaacattagaga 20105761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 420
Target Start/End: Complemental strand, 35555937 - 35555842
Alignment:
Q  325 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagtta 420  Q
    |||||||| ||||| ||||||| | |||||| ||| |  ||| ||||||||||||||||| | || |||||||||||||| | |||| ||||||||    
T  35555937 agagagttcgggtagcacctatagtagaaaagatggtagaaactagacttaggtggtttgggcatttagagagaagacctgtggattctgtagtta 35555842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 418
Target Start/End: Original strand, 3254082 - 3254216
Alignment:
Q  287 gtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtt 382  Q
    |||||| | ||||||||| |||||||||||||||||||    ||| ||||| |||| ||||| | | |||||| |||||| ||||||| |||||||||||    
T  3254082 gtaagaatgtatgagatatgattagaaatgaaaatattaataagaaagttgtggtagcacctttagtagaaaagatgatggaaaatag-cttaggtggtt 3254180  T
Q  383 tgagtatatagagagaagacctttagattatgtagt 418  Q
    ||   |||||| | |||||||| |  ||||||||||    
T  3254181 tggacatatagtgtgaagacctatgaattatgtagt 3254216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 44860771 - 44860833
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatg 316  Q
    |||||||||||||||||||| | | ||||||||||||||||| |||  ||| |||||||||||    
T  44860771 tagcagaaatgaggatgttgtgttggatgtgtggtaagactagatggaataagattagaaatg 44860833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 13805508 - 13805463
Alignment:
Q  372 cttaggtggtttgagtatatagagagaagacctttagattatgtag 417  Q
    ||||||||||||| |||| ||||||||||||||||||||| |||||    
T  13805508 cttaggtggtttgggtatgtagagagaagacctttagattttgtag 13805463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 27991789 - 27991704
Alignment:
Q  245 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    |||||||  |||||||||||| ||||||| | | |||||||||||||| || ||||||||| |||| |||| |  |||||||||||    
T  27991789 aaataagtgtagcagaaatgaagatgttgtgttggatgtgtggtaagattagatgagatagaattaaaaataacgatattagagag 27991704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 418
Target Start/End: Original strand, 31339529 - 31339621
Alignment:
Q  325 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    ||||||||||||||  |||||||| ||||||| || |  ||| ||  ||||||||||||||| || |||||||||||| | |||||||||||||    
T  31339529 agagagttggggtagaacctatggtagaaaaa-tggtcgaaactaagcttaggtggtttgagcatgtagagagaagacttgtagattatgtagt 31339621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 40933253 - 40933188
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattaga 327  Q
    |||||||||||||| |  |||||||||||||| |||   ||||| |||||||||||||||||||||    
T  40933253 atgaggatgttgcgttgaatgtgtggtaagacaatacatgatagaattagaaatgaaaatattaga 40933188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 384
Target Start/End: Original strand, 49987337 - 49987479
Alignment:
Q  246 aataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattaga----gagttggggtaaca 341  Q
    ||||||| ||||||| |||||||||||| | |  |||| | ||||||||| |   ||||||||||||||||| || ||||||    ||||  |||| |||    
T  49987337 aataagcttagcagagatgaggatgttgtgttgaatgtttagtaagactagacatgataggattagaaatgacaacattagatagagagtctgggtcaca 49987436  T
Q  342 cctatggcagaaaaaatgatgaaaaatagacttaggtggtttg 384  Q
    ||||| | |||||| ||| || ||||||| |||||||||||||    
T  49987437 cctatagtagaaaagatggtggaaaataggcttaggtggtttg 49987479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 403
Target Start/End: Complemental strand, 31960179 - 31960026
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaacacctatggc 349  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||    ||||||| |||||| ||||||| |     
T  31960179 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgacaccattagagagagagtgggggtagcacctatagt 31960080  T
Q  350 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 403  Q
    ||||||  || |  ||||||| ||||| ||||||| | || |||||||||||||    
T  31960079 agaaaagttggtagaaaataggcttagatggtttgggcatgtagagagaagacc 31960026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 346
Target Start/End: Original strand, 45423544 - 45423628
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctat 346  Q
    |||||||||||| | | | ||||||||||||||| | | ||||| ||||||||||| || |||| ||||||| |||| |||||||    
T  45423544 atgaggatgttgtgttggttgtgtggtaagactagacgggatagaattagaaatgacaacattatagagttgaggtagcacctat 45423628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 401
Target Start/End: Original strand, 30807511 - 30807658
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaa 353  Q
    ||||||||| |||||||||||| |  |||||| |||| |||| ||| ||||| ||||| |||||  | || |||||||||  ||| ||| ||| | ||||    
T  30807511 tagcagaaacgaggatgttgcgttgaatgtgtagtaaaactagatgtgatagaattaggaatgacgacataagagagttgatgtagcacatatagtagaa 30807610  T
Q  354 aaaatgatgaaaaatagacttaggtggtttgagtatatagagagaaga 401  Q
    || ||| |  ||| || ||||||||| |||||| | ||||||||||||    
T  30807611 aagatggtagaaactaaacttaggtgatttgagcacatagagagaaga 30807658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 45185357 - 45185306
Alignment:
Q  279 gatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| ||||||||| ||||||||| ||||||||||| || |||||||||    
T  45185357 gatgtgtagtaagactagatgagatagaattagaaatgacaacattagagag 45185306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 401
Target Start/End: Complemental strand, 39100890 - 39100749
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag--ttggggtaacacctatggcagaaaaaatg 359  Q
    |||||||||||||||   ||| |||||||||||| |   ||||||||||| ||||| |  |||||||||  | |||||| ||||||| | ||||||  ||    
T  39100890 atgaggatgttgcgccaaatgagtggtaagactagaaatgataggattaggaatgacaccattagagagagtgggggtagcacctatagaagaaaagttg 39100791  T
Q  360 atgaaaaatagacttaggtggtttgagtatatagagagaaga 401  Q
    ||  ||||||| ||||| ||||||||  || |||||||||||    
T  39100790 atagaaaataggcttagatggtttgaacatgtagagagaaga 39100749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 404
Target Start/End: Original strand, 47611744 - 47611798
Alignment:
Q  350 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacct 404  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||||||||||||||    
T  47611744 agaaaagatgatggaaaataggcttaggtggtttgggcatgtagagagaagacct 47611798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 18499784 - 18499841
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagatag 305  Q
    |||||||||||||||||| ||||||| | | |||||||| |||||||| | |||||||    
T  18499784 taagcatagcagaaatgaagatgttgtgttggatgtgtgataagactagacgagatag 18499841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 418
Target Start/End: Original strand, 28497482 - 28497574
Alignment:
Q  325 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    |||||||||||||| ||||| | | |||||| ||  || |||| || ||||||||||||| | || |||||||||||| | |||||||||||||    
T  28497482 agagagttggggtagcacctttagtagaaaagattgtggaaaa-aggcttaggtggtttgggcatgtagagagaagacttgtagattatgtagt 28497574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 33227126 - 33227167
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagacta 295  Q
    ||||||| |||||||||||||||| |||| ||||||||||||    
T  33227126 tagcagagatgaggatgttgcgctggatgagtggtaagacta 33227167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 12494667 - 12494743
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  12494667 tagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagag 12494743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 23906666 - 23906590
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||||||||||||| | |||| |||| ||||||| |  |||||||||||| ||||| |  |||||||||    
T  23906666 tagcagagatgaggatgttgcgttggatgagtggcaagactagacaagataggattaggaatgacaccattagagag 23906590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 25257828 - 25257792
Alignment:
Q  368 tagacttaggtggtttgagtatatagagagaagacct 404  Q
    ||||||||||||||||||| || ||||||||||||||    
T  25257828 tagacttaggtggtttgagcatgtagagagaagacct 25257792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 338
Target Start/End: Complemental strand, 43070129 - 43070045
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggta 338  Q
    ||||||| ||||  |||||| | | |||||||||||||| || |   ||||||||||||||||| || |||||||||||| ||||    
T  43070129 tagcagagatgatcatgttgggttggatgtgtggtaagattagacaggataggattagaaatgacaacattagagagttgaggta 43070045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 43433835 - 43433911
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||||||||||||| | |||| |||| ||||||| |  |||||||||||| ||||| |  |||||||||    
T  43433835 tagcagagatgaggatgttgcgttggatgagtggcaagactagacaagataggattaggaatgacaccattagagag 43433911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 403
Target Start/End: Complemental strand, 48622906 - 48622755
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag--ttggggtaacacctatggcag 351  Q
    ||||||| |||||||||||||  | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||  | |||||| |||| || | ||    
T  48622906 tagcagagatgaggatgttgctttggatgagtggtaagactagacatgataggattaggaatgacaccattagagagagtgggggtagcacccatagtag 48622807  T
Q  352 aaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 403  Q
    ||||  || |  ||||||| ||||| ||||||| | || |||||||||||||    
T  48622806 aaaagttggtagaaaataggcttagatggtttgggcatgtagagagaagacc 48622755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 383
Target Start/End: Original strand, 50680648 - 50680789
Alignment:
Q  246 aataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt----agagagttggggtaaca 341  Q
    |||||| ||||| || | |||||||||| | |  |||||| | |||||||||||| |||||||| ||||| | || |||    |||||||| ||| ||||    
T  50680648 aataagtatagcggagacgaggatgttgtgttgaatgtgtagcaagactatatgacataggattggaaataacaacattagagagagagttagggcaaca 50680747  T
Q  342 cctatggcagaaaaaatgatgaaaaatagacttaggtggttt 383  Q
    ||||| |  ||||| ||| || ||||||| ||||||||||||    
T  50680748 cctatagttgaaaagatggtggaaaataggcttaggtggttt 50680789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 53518571 - 53518531
Alignment:
Q  364 aaaatagacttaggtggtttgagtatatagagagaagacct 404  Q
    ||||||| ||||||||||||| |||| ||||||||||||||    
T  53518571 aaaataggcttaggtggtttgggtatgtagagagaagacct 53518531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 400
Target Start/End: Original strand, 56225097 - 56225133
Alignment:
Q  364 aaaatagacttaggtggtttgagtatatagagagaag 400  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  56225097 aaaataggcttaggtggtttgagtatgtagagagaag 56225133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 56375207 - 56375283
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |  ||||| |||||| ||||| |  |||||||||    
T  56375207 tagcagagatgaggatgttgcgttggatgagtggtaagactagacaagataagattaggaatgacaccattagagag 56375283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 411
Target Start/End: Complemental strand, 44245 - 44072
Alignment:
Q  245 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaat-------attagagagttggggt 337  Q
    ||||||||  ||| || |||||||||||||| | |||||| |||||||||| |||  |||| |||| |||||| |||       ||||||||||||||||    
T  44245 aaataagcgcagcggagatgaggatgttgcgttggatgtgcggtaagactagatggtatagtattaaaaatgacaattgacaatattagagagttggggt 44146  T
Q  338 aacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagatt 411  Q
    | ||||||| | |||||| |||  | ||||||| ||||||||||||| | || ||||||||||||||| |||||    
T  44145 agcacctatagtagaaaagatggcggaaaataggcttaggtggtttgggcatgtagagagaagaccttcagatt 44072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 404
Target Start/End: Complemental strand, 9579053 - 9578914
Alignment:
Q  267 gatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag--ttggggtaacacctatggcagaaaaaatgatgaa 364  Q
    ||||||||| | |||||||||||||| || ||  ||||| |||| |||||| ||| ||||||||  ||||||| |||| ||| | || ||| |||||| |    
T  9579053 gatgttgcgttggatgtgtggtaagaatagatatgatagaattaaaaatgacaatgttagagagagttggggtgacacatatagtagtaaagatgatgta 9578954  T
Q  365 aaatagacttaggtggtttgagtatatagagagaagacct 404  Q
    ||||||||||||||||||||   || ||||||||||||||    
T  9578953 aaatagacttaggtggtttggacatgtagagagaagacct 9578914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 336
Target Start/End: Complemental strand, 9647970 - 9647888
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttgggg 336  Q
    ||||||| |||||||||||||| | ||||||||||||||||| ||| |||| |||||||||||  || |||| ||||||||||    
T  9647970 tagcagagatgaggatgttgcgttggatgtgtggtaagactagatgtgataagattagaaatgtcaacattatagagttgggg 9647888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 45077656 - 45077727
Alignment:
Q  245 aaataagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatg 316  Q
    ||||||||||||| || |||||||||||||| | ||||||||||||||||| |  |||||| ||||||||||    
T  45077656 aaataagcatagctgagatgaggatgttgcgttggatgtgtggtaagactagactagatagaattagaaatg 45077727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 411
Target Start/End: Original strand, 7825269 - 7825438
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagaga------gttggggtaaca 341  Q
    ||||| ||||||| || ||||||||||| | ||||||||||||||||| |   |||| |||||||||||| | |||||||||      ||||| ||| ||    
T  7825269 taagcgtagcagagattaggatgttgcgttggatgtgtggtaagactagactggatatgattagaaatgacactattagagagagagtgttggagtagca 7825368  T
Q  342 cctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagatt 411  Q
    ||||| |  | ||| ||| |||||||||  ||||| ||||||||| || |||||||||||| | ||||||    
T  7825369 cctatagttgtaaatatggtgaaaaataagcttagttggtttgagcatgtagagagaagacatgtagatt 7825438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 402
Target Start/End: Complemental strand, 9556724 - 9556582
Alignment:
Q  263 tgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagag----agttggggtaacacctatggcagaaaaaat 358  Q
    ||||||||||| | | |||||||||||||| || | | |||| |||||||||||| || |||||||    |||||||||||||| ||| | || ||||||    
T  9556724 tgaggatgttgtgttggatgtgtggtaagattagacgggatatgattagaaatgacaacattagagagaaagttggggtaacacttatagtag-aaaaat 9556626  T
Q  359 gatgaaaaatagacttaggtggtttgagtatatagagagaagac 402  Q
    | || ||||||| ||||||||||||  | || ||||||||||||    
T  9556625 ggtggaaaataggcttaggtggtttaggcatgtagagagaagac 9556582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 420
Target Start/End: Original strand, 11017268 - 11017401
Alignment:
Q  289 aagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgag 386  Q
    ||||||| |||||||| |||||| ||||||||||||  ||||||||| |||| ||||||| | |||||| ||  || ||| | | |||| |||||||| |    
T  11017268 aagactagatgagataagattaggaatgaaaatattaaagagagttgaggtagcacctatagtagaaaagatcgtggaaactcggcttaagtggtttggg 11017367  T
Q  387 tatatagagagaagacctttagattatgtagtta 420  Q
    ||| | |||||||||||  |||||| ||||||||    
T  11017368 tatgtggagagaagacccgtagattttgtagtta 11017401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 384
Target Start/End: Original strand, 12734626 - 12734750
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcagaaaaaatg 359  Q
    |||||||||||| ||| |||| |||||||||||| | | ||||||||||||||||| |  |||  ||||||| |||||| ||||||| | ||||||| ||    
T  12734626 atgaggatgttgtgctggatgagtggtaagactagacgggataggattagaaatgacaccattagagagagtgggggtagcacctatagtagaaaaattg 12734725  T
Q  360 atgaaaaatagacttaggtggtttg 384  Q
     |  ||||||| ||||| |||||||    
T  12734726 gtagaaaataggcttagatggtttg 12734750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 410
Target Start/End: Original strand, 40759024 - 40759177
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag-----ttggggtaacacctatggcagaaaaa 356  Q
    ||||||||||| | || ||||||  ||||||||| |  ||||| |||||||||||| || |||||||||     ||||| || ||| ||| | |||||||    
T  40759024 atgaggatgtttcactagatgtggtgtaagactagacaagataagattagaaatgacaacattagagagagaggttgggttagcacttatagtagaaaaa 40759123  T
Q  357 atgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagat 410  Q
    ||| || ||| |||| |||||||||||| | || |||||||||||| |||||||    
T  40759124 atggtggaaactagagttaggtggtttgtgcatgtagagagaagacttttagat 40759177  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 410
Target Start/End: Complemental strand, 41763398 - 41763247
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag---ttggggtaacacctatggcagaaaaaat 358  Q
    |||||||||||||| | |||| |||||||||||| |  |||||||||||| ||||| |  |||||||||    ||||||||||||||| | ||||||  |    
T  41763398 atgaggatgttgcgatggatgagtggtaagactagacaagataggattaggaatgacaccattagagagagagtggggtaacacctatagtagaaaagtt 41763299  T
Q  359 gatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagat 410  Q
    | |  ||||||| |||||||||||||   ||  ||||||||||||| |||||    
T  41763298 ggtagaaaataggcttaggtggtttggacatgcagagagaagacctgtagat 41763247  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 399
Target Start/End: Original strand, 41330062 - 41330195
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgat 361  Q
    |||| ||||||| | | |||||||||||| ||||| |  |||| |||||||||| ||    ||||||||||| |||||||||| | | |||||| |||||    
T  41330062 atgatgatgttgtgttggatgtgtggtaaaactatgtaggatatgattagaaataaa----ttagagagttgaggtaacacctttagtagaaaagatgat 41330157  T
Q  362 gaaaaatagacttaggtggtttgagtatatagagagaa 399  Q
     |||||||| ||||| ||||||||  || |||||||||    
T  41330158 caaaaataggcttagatggtttgaacatgtagagagaa 41330195  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 383
Target Start/End: Original strand, 44411650 - 44411762
Alignment:
Q  271 ttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagagttggggtaacacctatggcagaaaaaatgatgaaaaatag 370  Q
    ||||| ||||||||| ||||||||| |||||||| ||||| |||||| || ||||||||||||  ||| ||||||| | || ||| ||| || |||||||    
T  44411650 ttgcgtttgatgtgttgtaagactagatgagatatgattacaaatgacaacattagagagttgaagtagcacctatagtaggaaagatggtggaaaatag 44411749  T
Q  371 acttaggtggttt 383  Q
     |||  |||||||    
T  44411750 gcttccgtggttt 44411762  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 37393502 - 37393455
Alignment:
Q  283 tgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||||||||| |||||||| ||| |||||||||||||||||||||    
T  37393502 tgtggtaagactagatgagatatgatcagaaatgaaaatattagagag 37393455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 418
Target Start/End: Original strand, 11412713 - 11412806
Alignment:
Q  325 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    |||||||||||||| ||||||| | |||||| ||| || ||||||| ||||||| ||||| | || |||||| |||| || |||||| ||||||    
T  11412713 agagagttggggtagcacctatagtagaaaatatggtggaaaataggcttaggttgtttgggcatttagagataagaactgtagattctgtagt 11412806  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 418
Target Start/End: Complemental strand, 43752237 - 43752144
Alignment:
Q  325 agagagttggggtaacacctatggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    |||||||||||||| ||||||| | ||||||  || |  ||||||| |||||||| ||||   || |||||||||||||| |||||||||||||    
T  43752237 agagagttggggtagcacctatagtagaaaaggtggtagaaaataggcttaggtgatttggacatgtagagagaagacctatagattatgtagt 43752144  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 16097347 - 16097292
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatga 317  Q
    ||||||||||||| || |||| |||||||||||| ||| |||| ||||||||||||    
T  16097347 atgaggatgttgcactggatgagtggtaagactagatgggatatgattagaaatga 16097292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 4598934 - 4598888
Alignment:
Q  249 aagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagacta 295  Q
    |||| |||||||||||| ||||||||| | |||||||||||||||||    
T  4598934 aagcgtagcagaaatgatgatgttgcgttggatgtgtggtaagacta 4598888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 408
Target Start/End: Complemental strand, 41779573 - 41779515
Alignment:
Q  350 agaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttag 408  Q
    |||||||||| || ||| | ||||||||||||||||  || ||||||||||||||||||    
T  41779573 agaaaaaatggtggaaactcgacttaggtggtttgatcatgtagagagaagacctttag 41779515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 418
Target Start/End: Complemental strand, 23714629 - 23714458
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattag--agagttggggtaacaccta 345  Q
    ||||||||||||| || || |||||| | | ||||||||||||||||| |  | ||||||||| ||||||  | |||||  |||||| ||||| ||| ||    
T  23714629 taagcatagcagagattagaatgttgtgttggatgtgtggtaagactagacaaaataggattaaaaatgacgacattagatagagtt-gggtagcacata 23714531  T
Q  346 tggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    | | |||||| ||| || ||| |||||||| || ||||  | || |||||||||||| | | |||||||||||    
T  23714530 tagtagaaaagatggtggaaactagacttatgtagtttaggcatgtagagagaagacttgtggattatgtagt 23714458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 418
Target Start/End: Complemental strand, 24102301 - 24102130
Alignment:
Q  248 taagcatagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattag--agagttggggtaacaccta 345  Q
    ||||||||||||| || || |||||| | | ||||||||||||||||| |  | ||||||||| ||||||  | |||||  |||||| ||||| ||| ||    
T  24102301 taagcatagcagagattagaatgttgtgttggatgtgtggtaagactagacaaaataggattaaaaatgacgacattagatagagtt-gggtagcacata 24102203  T
Q  346 tggcagaaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacctttagattatgtagt 418  Q
    | | |||||| ||| || ||| |||||||| || ||||  | || |||||||||||| | | |||||||||||    
T  24102202 tagtagaaaagatggtggaaactagacttatgtagtttaggcatgtagagagaagacttgtggattatgtagt 24102130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 403
Target Start/End: Complemental strand, 3244016 - 3243865
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatatt--agagagttggggtaacacctatggcag 351  Q
    ||||||| || ||||||||||| | |||| || ||||||||| |   ||||||||||  ||||| |  |||  ||||||| |||||| ||||||| | |     
T  3244016 tagcagagataaggatgttgcgttggatgagtagtaagactacacatgataggattatgaatgacaccattagagagagtgggggtagcacctatagtaa 3243917  T
Q  352 aaaaaatgatgaaaaatagacttaggtggtttgagtatatagagagaagacc 403  Q
    ||||  ||||| ||||||| ||||| ||||||| | || |||||||||||||    
T  3243916 aaaagttgatggaaaataggcttagatggtttgggaatgtagagagaagacc 3243865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 21834495 - 21834531
Alignment:
Q  279 gatgtgtggtaagactatatgagataggattagaaat 315  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  21834495 gatgtgtggtaagactagatgagataagattagaaat 21834531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 36183368 - 36183444
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||||||||||||| | |||| |||||||||||| |   ||||||||||| ||||| |  |||||||||    
T  36183368 tagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggattaggaatgacacaattagagag 36183444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 402
Target Start/End: Original strand, 38434876 - 38435021
Alignment:
Q  262 atgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag----ttggggtaacacctatggcagaaaaaa 357  Q
    |||||||||||||  | |||| ||||||| |||| | |||| | |||||||||||| || |||||||||    |||||||| ||||||| | |||||| |    
T  38434876 atgaggatgttgcattggatgcgtggtaaaactagacgagagaagattagaaatgacaacattagagagagaattggggtagcacctatagtagaaaaga 38434975  T
Q  358 tgatgaaaaatagac-ttaggtggtttgagtatatagagagaagac 402  Q
    || || ||| ||||| || ||||||||| | || || |||||||||    
T  38434976 tggtggaaactagactttgggtggtttgggcatgtaaagagaagac 38435021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 42092436 - 42092512
Alignment:
Q  254 tagcagaaatgaggatgttgcgcttgatgtgtggtaagactatatgagataggattagaaatgaaaatattagagag 330  Q
    ||||||| |||| ||||||||  | ||||||| ||||||||| | | |||| |||||||||||| ||| ||||||||    
T  42092436 tagcagagatgatgatgttgcattggatgtgtagtaagactagacgggatatgattagaaatgacaatgttagagag 42092512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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