View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14003_low_6 (Length: 426)
Name: NF14003_low_6
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14003_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 35313728 - 35313967
Alignment:
| Q |
19 |
tgattaccattgcaaatgctgtgtttggatctaaaccaccaatttctttggaagttctcaccaaagcctttcaagtggataaaaatgtaatcgactatct |
118 |
Q |
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| T |
35313728 |
tgattaccattgcaaatgctgtgtttggatctaaaccaccaatttctttggaagttctcaccaaagcctttcaagtggataaaaatgtaatcgactatct |
35313827 |
T |
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| Q |
119 |
tcaaaagcaattctggtacaacaatagttaattgtgcttgaacgttggacacgtgatttccttaagtttgcctcatgttgagttgagtctaagaaaattt |
218 |
Q |
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| T |
35313828 |
tcaaaagcaattctggtacaacaatagttaattgtgcttgaacgttgaacacgtgatttccttaagtttgcctcatgttgagttgagtctaagaaaattt |
35313927 |
T |
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| Q |
219 |
gactaatatagcaaat-aatgcatgaggatatgcagtatg |
257 |
Q |
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| T |
35313928 |
gactaatatagcaaataaatgcatgaggatatgcagtatg |
35313967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 311 - 410
Target Start/End: Original strand, 35314021 - 35314120
Alignment:
| Q |
311 |
atcatgcaagtataataaatagtattttgtttctgctttggtacttcatattgccttttgtccttaccactattagaaacattcttagagatactcttga |
410 |
Q |
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| T |
35314021 |
atcatgcaagtataataaatagtattttgtttctgctttggtacttcatattgctttttgtccttaccactattagaaacattctcagagatgctcttga |
35314120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 702390 - 702283
Alignment:
| Q |
27 |
attgcaaatgctgtgtttggatctaaaccaccaatttctttggaagttctcaccaaagcctttcaagtggataaaaatgtaatcgactatcttcaaaagc |
126 |
Q |
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| T |
702390 |
attgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggacaatcttcaaaaac |
702291 |
T |
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| Q |
127 |
aattctgg |
134 |
Q |
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|||||||| |
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| T |
702290 |
aattctgg |
702283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 713048 - 713155
Alignment:
| Q |
27 |
attgcaaatgctgtgtttggatctaaaccaccaatttctttggaagttctcaccaaagcctttcaagtggataaaaatgtaatcgactatcttcaaaagc |
126 |
Q |
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||||| |||||||| ||||||||||| ||| |||||||| ||||||||||||||||| |||||||| || || ||| || | || |||||||||| | |
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| T |
713048 |
attgctaatgctgtatttggatctaatccaaaaatttcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggataatcttcaaaaac |
713147 |
T |
|
| Q |
127 |
aattctgg |
134 |
Q |
| |
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|||||||| |
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| T |
713148 |
aattctgg |
713155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 717692 - 717585
Alignment:
| Q |
27 |
attgcaaatgctgtgtttggatctaaaccaccaatttctttggaagttctcaccaaagcctttcaagtggataaaaatgtaatcgactatcttcaaaagc |
126 |
Q |
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||||| |||||||| ||||||||||| ||| ||| |||| ||||||||||||||||| |||||||| || || ||| || | ||| |||||||||| | |
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| T |
717692 |
attgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggacaatcttcaaaaac |
717593 |
T |
|
| Q |
127 |
aattctgg |
134 |
Q |
| |
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|||||||| |
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| T |
717592 |
aattctgg |
717585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 710659 - 710556
Alignment:
| Q |
27 |
attgcaaatgctgtgtttggatctaaaccaccaatttctttggaagttctcaccaaagcctttcaagtggataaaaatgtaatcgactatcttcaaaagc |
126 |
Q |
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||||| |||||||| ||||||||||| ||| ||| |||| ||||||||||||||||| |||||||| || || ||| || | ||| |||||||||| | |
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| T |
710659 |
attgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggacaatcttcaaaaac |
710560 |
T |
|
| Q |
127 |
aatt |
130 |
Q |
| |
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|||| |
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|
| T |
710559 |
aatt |
710556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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