View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14004_high_1 (Length: 434)
Name: NF14004_high_1
Description: NF14004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14004_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 13 - 417
Target Start/End: Complemental strand, 25342516 - 25342112
Alignment:
| Q |
13 |
aaaatcctatgtacaattcaatcctcttgtagctattaatgaatagtttgaataacaagatttttaggttattattgcaaatccaagtacaattatctca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25342516 |
aaaatcctatgtacaattcaatcctcttgtagctattaatgaatagtttgaataacaagatttttaggttattattgcaaatgcaagtacaattatctca |
25342417 |
T |
|
| Q |
113 |
ttgaagttgtccttttatattattacttatgtaaaaagcaaataaacccatgttaaggttgatttgtccattagttgttgggccccgtccttatcaagat |
212 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25342416 |
ttgaagttgtccttatatattattacttatgtaaaaagcaaataaacccatgttaaggttgatttgtccattagttgttgggccccgtccttatcaagat |
25342317 |
T |
|
| Q |
213 |
caggtggactatcactatcaaatttcacaattcaaagtgcattgaagcattattctccacaaagacacaaactcaaatgcagatgtacgtaacaaccatt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25342316 |
caggtggactatcactatcaaatttcacaattcaaagtgcattgaagcattattctccacaaagacacaaacccaaatgcagatgtacgtaacaaccatt |
25342217 |
T |
|
| Q |
313 |
gcgtttggtcatgatgtggtatcatcgattgtcactaattcacatagtgaactagggnnnnnnnnngttctaattagatgagagggagttcccaaatgta |
412 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25342216 |
gcgtttggtgatgatgtggtatcatcgattgtcactaattcacatagtgaactagggtttttttttgttctaattagatgagagggagttcccaaatgta |
25342117 |
T |
|
| Q |
413 |
gaacc |
417 |
Q |
| |
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||||| |
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| T |
25342116 |
gaacc |
25342112 |
T |
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