View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14004_low_2 (Length: 339)
Name: NF14004_low_2
Description: NF14004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14004_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 10162050 - 10161743
Alignment:
| Q |
18 |
gtattgtagatgctcccattactaaattcacagaattccttttgtgctatcatgaaatcaacgaattggtttgtgaagcatccttccatagaaggaacat |
117 |
Q |
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||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10162050 |
gtattgtagatgctcccattactgaattcacagaattccatttgtgcaatcatgaaatcaacgaattggtttgtgaagcatccttccatagaaggaacat |
10161951 |
T |
|
| Q |
118 |
caatgatatgtgagctttcaattggagtttttcccattctctcccaaatggaagtgaaagctgtaaaagcacatgtgctgacaaacatgtaattctcaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10161950 |
caatgatatgtgagctttcaattggagtttttcccattctctcccaaatggaagtgaaagctgtaaaagcacatgtgctgacaaacatgtaattctcaac |
10161851 |
T |
|
| Q |
218 |
attcgctatgtttttagcatcttgtaccactgatgccatatatgtgtcatgaataacaacgacccttttgaaaacagatgaaagtgattgcatgagttcc |
317 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10161850 |
attcgctatgtttttagcatcttgtaccacagaagccatatatgtgtcatgaattacaacgacccttttgaaaacagatgaaagtgattgcatgagttcc |
10161751 |
T |
|
| Q |
318 |
gccacagg |
325 |
Q |
| |
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|||||||| |
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| T |
10161750 |
gccacagg |
10161743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 1609051 - 1608741
Alignment:
| Q |
18 |
gtattgtagatgctcccattactaaattcacagaattccttttgtgctatcatgaaatcaacgaattggtttgtgaagcatccttccatagaaggaacat |
117 |
Q |
| |
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||||| |||||||| |||| ||| |||||| ||||||| ||||||| | ||||| ||| | || | |||||||||||||||||||||||||||||| |
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| T |
1609051 |
gtattatagatgcttccatcactgaattcatagaattcactttgtgcattaatgaagtcatatatttcggttgtgaagcatccttccatagaaggaacat |
1608952 |
T |
|
| Q |
118 |
caatgatatgtgagctttcaattggagtttttcccattctctcccaaatggaagtgaaagctgtaaaagcacatgtgctgacaaacatgtaattctcaac |
217 |
Q |
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|||| ||||| |||||||||| ||||| |||||||| | |||||||||||||||||||| || |||||||||||| || | |||| |||||||||||| |
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| T |
1608951 |
caataatatgcgagctttcaaatggaggttttcccactttctcccaaatggaagtgaaaattgaaaaagcacatgtactaagaaacgagtaattctcaac |
1608852 |
T |
|
| Q |
218 |
attcgctatgtttttagcatcttgtaccactgatgccatatatgtgtcatgaataacaacgacccttttgaaaacagatgaaagtgattgcatgagttcc |
317 |
Q |
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||| ||||||||||||||||||||||||||||||||||| | | |||||||| ||||||||| ||| |||||||||||||||||| ||||||||||| |
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| T |
1608851 |
atttgctatgtttttagcatcttgtaccactgatgccattaaactatcatgaatcacaacgaccttttcgaaaacagatgaaagtgaatgcatgagttct |
1608752 |
T |
|
| Q |
318 |
gccacaggttc |
328 |
Q |
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||||| ||||| |
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| T |
1608751 |
gccactggttc |
1608741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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