View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_high_10 (Length: 456)
Name: NF14005_high_10
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Original strand, 29222493 - 29222919
Alignment:
| Q |
16 |
atcaaaatcagccatggagttagtattttt-atgttggattgatggatattgagttagtgtttaagaatatatatttatgttgcatgcatatggagtta- |
113 |
Q |
| |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29222493 |
atcaaaatcagcgatggagttagtattttttatgttggattgatggatattgagttagtgtttaagaatatatatttatgttgcatgcatatggagttaa |
29222592 |
T |
|
| Q |
114 |
gaattttttgcatggacaaaaccaaaatctaagaatatgcaaatttgttttgttaatgcaggaagacaacacaaatgtggacaagcacacacaaaaccaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29222593 |
gaattttttgcatggacaaaaccaaaatctaagaatatgcaaatttgttttgttaatgcaggaagacaacacaaatgtggacaagcacacacaaaaccaa |
29222692 |
T |
|
| Q |
214 |
catggattttagcttctcaattattgtcttcctccttcattttgttatcctttttctcnnnnnnnctcctgtttattcttctagaacaggtatccaccaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29222693 |
catggattttagcttctcaattattgtcttcctccttcattttgttatcctttttctctttttttctcctgtttattcttctagaacaggtatccaccaa |
29222792 |
T |
|
| Q |
314 |
ttagcgaatcaaatcggatcagtggaagaagttcacaagttgaagaagacgatgagaaatgatcttcagtctatcaacaagcctgctcttaagacaattc |
413 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29222793 |
ttagcgaatcgaatcggatcagtggaagaagttcacaagttgaagaagacgatgagaaatgatcttcagtctatcaacaagtctgctcttaagacaattc |
29222892 |
T |
|
| Q |
414 |
aagtatgttacaacaaagcttaaagct |
440 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
29222893 |
aagtatgttacaacaaagcttaaagct |
29222919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 16 - 438
Target Start/End: Original strand, 26919250 - 26919671
Alignment:
| Q |
16 |
atcaaaatcagccatggagttagtatttttatgttggattgatggatattgagttagtgtttaagaatatatatttatgttgcatgcatatggagttaga |
115 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||| ||| ||||| ||||| |||||||||||||||||| ||| ||||||||||||||||| |
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|
| T |
26919250 |
atcaaaatcaggtatggagt-agtatttttatgttggacagat----attgaattagtatttaagaatatatatttacgttcgatgcatatggagttaga |
26919344 |
T |
|
| Q |
116 |
attttttgcatggacaaaaccaaaatctaaga--atatgcaaatttgttttgttaatgcaggaagacaacacaaatgtggacaagcacacacaaaaccaa |
213 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||| ||||| ||||| |||||| | |
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|
| T |
26919345 |
attttt-gcatggacaaaacaaaaatctaagagaataaacaaatttgttttgttaatgcaggaagacaacacaaacgtgtacaagaacacaaaaaaccca |
26919443 |
T |
|
| Q |
214 |
catggattttagcttctcaattattgtcttcctccttcattttgttatcctttttctcnnnnnnnctcctgtttattcttctagaacaggtatccaccaa |
313 |
Q |
| |
|
|| |||||||||||| ||||||| ||| | ||| |||||| | ||||||||| | || ||||||||||||| |||||||| ||||||| |
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|
| T |
26919444 |
cacggattttagctttccaattatcacctttcccctacattttatactcctttttccctttgtttgtcgtgtttattcttctgaaacaggtagccaccaa |
26919543 |
T |
|
| Q |
314 |
ttagcgaatcaaa---tcggatcagtggaagaagttcacaagttgaagaagacgatgagaaatgatcttcagtctatcaacaagcctgctcttaagacaa |
410 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||||||||||||||||| ||| | |||| ||||||||| ||| |||||||| | |||| | || |
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|
| T |
26919544 |
ttagccaatcaaactttccgatcagtggaagaagttcacaagttgaagaagcagataacaaatcgtcttcagtcgatcgccaagcctgttgttaaaagaa |
26919643 |
T |
|
| Q |
411 |
ttcaagtatgttacaacaaagcttaaag |
438 |
Q |
| |
|
||||||||||||| || ||||||||||| |
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|
| T |
26919644 |
ttcaagtatgttaaaataaagcttaaag |
26919671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 29252913 - 29253018
Alignment:
| Q |
132 |
aaaccaaaatctaagaatatgcaaatttgttttgttaatgcaggaagacaacacaaatgtggacaagcacacacaaaaccaacatggattttagcttctc |
231 |
Q |
| |
|
|||||||| | |||||||| ||||||||||| || |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |
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|
| T |
29252913 |
aaaccaaactttaagaataagcaaatttgttctggtaatgcaggaagacaacataaatgtgggcaagcacacacaaaaccaacatggattttagcttccc |
29253012 |
T |
|
| Q |
232 |
aattat |
237 |
Q |
| |
|
|||||| |
|
|
| T |
29253013 |
aattat |
29253018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 265
Target Start/End: Complemental strand, 29215750 - 29215609
Alignment:
| Q |
125 |
atggacaaaaccaaaatctaagaatatgcaaatttgttttgttaatgcaggaagacaacacaaatgtggacaagcacacacaaa-accaacatggatttt |
223 |
Q |
| |
|
||||||||||||||||| |||||| | ||||| ||||||||| ||||| |||||||||||||||||||| || ||||||||| || |||||||||||| |
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|
| T |
29215750 |
atggacaaaaccaaaatataagaacactcaaatgtgttttgttgatgcaagaagacaacacaaatgtggagaaaaacacacaaacacaaacatggatttt |
29215651 |
T |
|
| Q |
224 |
agcttctcaattattgtcttcctccttcattttgttatcctt |
265 |
Q |
| |
|
| || | || |||| | |||||||||||||| || ||||| |
|
|
| T |
29215650 |
aactccccagttatctccctcctccttcattttcttctcctt |
29215609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 423
Target Start/End: Original strand, 29253115 - 29253207
Alignment:
| Q |
331 |
atcagtggaagaagttcacaagttgaagaagacgatgagaaatgatcttcagtctatcaacaagcctgctcttaagacaattcaagtatgtta |
423 |
Q |
| |
|
||||||| ||||| | | |||||||||||||||| | | |||| ||||| ||| |||||||||| || | ||||||||||||| |||||||| |
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|
| T |
29253115 |
atcagtgcaagaaatccccaagttgaagaagacgttaacaaatcgtcttcggtccatcaacaagcatgttgttaagacaattcaggtatgtta |
29253207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 30910670 - 30910633
Alignment:
| Q |
386 |
atcaacaagcctgctcttaagacaattcaagtatgtta |
423 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |
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|
| T |
30910670 |
atcaacaagcctgctgttaagacaattcaagtatgtta |
30910633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 30920089 - 30920052
Alignment:
| Q |
386 |
atcaacaagcctgctcttaagacaattcaagtatgtta |
423 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
30920089 |
atcaataagcctgctgttaagacaattcaagtatgtta |
30920052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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