View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_high_12 (Length: 378)
Name: NF14005_high_12
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 24 - 371
Target Start/End: Original strand, 31054423 - 31054770
Alignment:
| Q |
24 |
gtattttgatttgatcatcttgagatttagagcatatattgatataatctattttcaagccttaacacacatttacacaggcacatcatgtagatccact |
123 |
Q |
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| T |
31054423 |
gtattttgatttgatcatcttgagatttagagcatatattgatataatctattttcaagccttaacacacatttacacaggcacatcatgtagatgcact |
31054522 |
T |
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| Q |
124 |
cttacatttatcatacttcaatattttccaacaaaagtatgctatttacactttcaaagctatgcttacaaacaaattgattttaacacttctcttttat |
223 |
Q |
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| T |
31054523 |
catacatttatcatacttcaatattttccaacaaaagtatgctatttacactttcaaagctatgcttacagacaaattgattttaacacttctcttttat |
31054622 |
T |
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| Q |
224 |
ccatctcttacggccttttgtttctgttgatccaagttttctttgtcagggaagcatccatatcacaagtattgttttaaagaattgagccatcctaaat |
323 |
Q |
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| T |
31054623 |
ccatctcttacggccttttgtttctgttgatccaagttttctttgtcagggaagcatccatatcacaagtattgttttaaagaattgagccatcctaaat |
31054722 |
T |
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| Q |
324 |
gtgaagtttgccgtcattatgtaagtttttcttccccttcctttgctt |
371 |
Q |
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| T |
31054723 |
gtgaagtttgccgtcattatgtaagtttttcttccccttcctttgctt |
31054770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 34744107 - 34744012
Alignment:
| Q |
239 |
ttttgtttctgttgatccaagttttctttgtcagggaagcatccatatcacaagtattgttttaaagaattgagccatcctaaatgtgaagtttgc |
334 |
Q |
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| T |
34744107 |
ttttttttttgttgatccaagttttctttgtcagggaagcatccatatcacaaatcttgttttaaagagttgactcacccaaaatgtgaagtttgc |
34744012 |
T |
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