View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_high_16 (Length: 299)
Name: NF14005_high_16
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_high_16 |
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| [»] scaffold0729 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 6791579 - 6791852
Alignment:
| Q |
1 |
aattgattgttctacctgtgttctatgctgctgccaatcccacttacggaagtttagagggaggtatgtttggaggagacgcttttcatgattttcttaa |
100 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
6791579 |
aattgattgtcctacctgtgttctatgctgctgtcaatcccacgtacggaagtttagagggaggtatgtttggaggagacacttttcatgattttctcaa |
6791678 |
T |
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| Q |
101 |
cagaatatcaatggaggaaatctctaaagaagaggacaagctcatgacctgggtagcagcgatcactaaagctaacagatatttaggatcacgtgatctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |||||||| |
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| T |
6791679 |
cagaatatcaatggaggaaatctctaaagaagaggacaagctcatgacctgggtagcagcgatcactaaagcaaacaattatttaggttcaagtgatctc |
6791778 |
T |
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| Q |
201 |
atactcaaacccgtatacaggtaattttaagttcttttttaaaataactgagacttgagattttaatttacacct |
275 |
Q |
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|||| ||||| |||| |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |
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| T |
6791779 |
atacataaaccaatatataggtaattttaagttc-tttttaaaatagttgagacttgagattttaatatacacct |
6791852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 60 - 281
Target Start/End: Complemental strand, 6593957 - 6593736
Alignment:
| Q |
60 |
ggaggtatgtttggaggagacgcttttcatgattttcttaacagaatatcaatggaggaaatctctaaagaagaggacaagctcatgacctgggtagcag |
159 |
Q |
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|||| |||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6593957 |
ggagatatgtttggaggagacacttttcatgattttctggatagaatatcaatggaggaaatctctaaagaagaagacaagctcatgacctgggtagcag |
6593858 |
T |
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| Q |
160 |
cgatcactaaagctaacagatatttaggatcacgtgatctcatactcaaacccgtatacaggtaattttaagttcttttttaaaataactgagacttgag |
259 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6593857 |
cgatcactaaagctaacaaatatttaggatcacgtgatctcatacccaaacccatatacaggtaattttaagttcttttttaaaataactgagacttgag |
6593758 |
T |
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| Q |
260 |
attttaatttacacctttcttt |
281 |
Q |
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|||||||||||||||| ||||| |
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| T |
6593757 |
attttaatttacacctatcttt |
6593736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0729
Description:
Target: scaffold0729; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 7050 - 6777
Alignment:
| Q |
1 |
aattgattgttctacctgtgttctatgctgctgccaatcccacttacggaagtttagagggaggtatgtttggaggagacgcttttcatgattttcttaa |
100 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
7050 |
aattgattgtcctacctgtgttctatgctgctctcaatcccacgtacggaagtttagagggaggtatgtttggaggagacacttttcatgattttctcaa |
6951 |
T |
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| Q |
101 |
cagaatatcaatggaggaaatctctaaagaagaggacaagctcatgacctgggtagcagcgatcactaaagctaacagatatttaggatcacgtgatctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |||||||| |
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| T |
6950 |
cagaatatcaatggaggaaatctctaaagaagaggacaagctcatgacctgggtagcagcgatcactaaagcaaacaattatttaggttcaagtgatctc |
6851 |
T |
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| Q |
201 |
atactcaaacccgtatacaggtaattttaagttcttttttaaaataactgagacttgagattttaatttacacct |
275 |
Q |
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|||| ||||| |||| ||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| |
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| T |
6850 |
atacataaaccaatatataggtaattttaagttct-ttttaaaatagttgagacttgagattttaatatacacct |
6777 |
T |
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