View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_high_17 (Length: 290)
Name: NF14005_high_17
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 3518776 - 3519041
Alignment:
| Q |
19 |
gaaatcaataatttgaccaacctaggctctgttggtcagaggataccttccttgaaaacttttctgtacactatactcttaacaattccatgcaactgag |
118 |
Q |
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| T |
3518776 |
gaaatcaataatttgaccaatctaggccctgttggtcagaggataccttcgttgaaaacttttctgtacactatactct-aacaattccatgcaactgag |
3518874 |
T |
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| Q |
119 |
cagtacttcatgagctacgataaggtctatcatggacaagcatcttaagttattaagaaactcaaccaattcaattggttaatcttcaaatttataaatg |
218 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3518875 |
cagtagttcatgagctacgataaggtctatcatggacaagcatctt----tattaagaaactcaaccaattcaattgattaatcttcaaatttataaatg |
3518970 |
T |
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| Q |
219 |
tctatcgggatcatcatcatttcaaattattttggcatttgctattttgatcacattgtggtagaataatt |
289 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
3518971 |
tccatcgggatcatcatcatttcaaattattttggcatttgctactttgatcacattgtggtagaaaaatt |
3519041 |
T |
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