View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14005_high_18 (Length: 284)
Name: NF14005_high_18
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 21 - 277
Target Start/End: Complemental strand, 6391448 - 6391192
Alignment:
| Q |
21 |
ccgtgaactgctcaggggaagcagactcaacaccagcattaagaacagtgttgacttcttcaacagacttgtttgtttccttctccctgagaccaacaaa |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6391448 |
ccgtgaactgctcaggggaagcagattcaacaccagcattaagaacagtgttgacttcttcaacagacttgtttgtttccttctccctgagaccaacaaa |
6391349 |
T |
|
| Q |
121 |
ataggaagccgctttctcacaaaagctttctccttgaaagattaacacattgaacaatgattcgccattgtacttaaagaccgcgaaatcattctctttc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6391348 |
ataggaagccgctttctcacaaaagctttctccttgaaagattaacacattgaacaatgattcgccattgtacttaaagactgcgaaatcattctctttc |
6391249 |
T |
|
| Q |
221 |
agagaatgatctcttgcaaactgatgccaaccgtccacgaagtaaacagtattatct |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6391248 |
agagaatgatctcttgcaaactgatgccaaccgtccacgaagtaaacagtattatct |
6391192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 115 - 272
Target Start/End: Complemental strand, 6372539 - 6372382
Alignment:
| Q |
115 |
aacaaaataggaagccgctttctcacaaaagctttctccttgaaagattaacacattgaacaatgattcgccattgtacttaaagaccgcgaaatcattc |
214 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||||||| | ||||||||| || | || | |||||| ||||||||||||||||| ||||||||| |
|
|
| T |
6372539 |
aacaaaataagaagctgctttctcacataagctttctccattaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattt |
6372440 |
T |
|
| Q |
215 |
tctttcagagaatgatctcttgcaaactgatgccaaccgtccacgaagtaaacagtat |
272 |
Q |
| |
|
||||||| |||||||||| | ||||| | ||||||||||||| |||||| ||||||| |
|
|
| T |
6372439 |
tctttcaaagaatgatctttcacaaaccgctgccaaccgtccatgaagtacacagtat |
6372382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 277
Target Start/End: Complemental strand, 6399615 - 6399454
Alignment:
| Q |
116 |
acaaaataggaagccgctttctcacaaaagctttctccttgaaagattaacacattgaacaatgattcgccattgtacttaaagaccgcgaaatcattct |
215 |
Q |
| |
|
|||||||| |||| || ||||||||||| || | ||| | ||||||||| || | || | |||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
6399615 |
acaaaataagaagttgccttctcacaaaaactatttccatcaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattct |
6399516 |
T |
|
| Q |
216 |
ctttcagagaatgatctcttgcaaactgatgccaaccgtccacgaagtaaacagtattatct |
277 |
Q |
| |
|
|||||| ||| ||||| | | || || ||||||||||||||||||||||||||||||||| |
|
|
| T |
6399515 |
ctttcaaagagtgatcgttcacgaattgttgccaaccgtccacgaagtaaacagtattatct |
6399454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 277
Target Start/End: Complemental strand, 6420785 - 6420624
Alignment:
| Q |
116 |
acaaaataggaagccgctttctcacaaaagctttctccttgaaagattaacacattgaacaatgattcgccattgtacttaaagaccgcgaaatcattct |
215 |
Q |
| |
|
|||||||| |||| || |||||||||||| | ||||| | ||||||||| || | || | |||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
6420785 |
acaaaataagaagttgccttctcacaaaagttatctccatcaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattct |
6420686 |
T |
|
| Q |
216 |
ctttcagagaatgatctcttgcaaactgatgccaaccgtccacgaagtaaacagtattatct |
277 |
Q |
| |
|
|||||| |||||||||| | | || | | ||||||| ||||||||||||||||||||||| |
|
|
| T |
6420685 |
ctttcaaagaatgatctttcacgaatcgctcccaaccgcccacgaagtaaacagtattatct |
6420624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 269
Target Start/End: Complemental strand, 6366989 - 6366835
Alignment:
| Q |
115 |
aacaaaataggaagccgctttctcacaaaagctttctccttgaaagattaacacattgaacaatgattcgccattgtacttaaagaccgcgaaatcattc |
214 |
Q |
| |
|
||||||||| ||||| ||||| ||||| ||||||||||| | ||||||||| || | || | |||||| || |||||||||||||| |||||||||| |
|
|
| T |
6366989 |
aacaaaataagaagctgctttttcacagaagctttctccattaaagattaaaacctcaaagagtgattcaccgttgtacttaaagacaaggaaatcattc |
6366890 |
T |
|
| Q |
215 |
tctttcagagaatgatctcttgcaaactgatgccaaccgtccacgaagtaaacag |
269 |
Q |
| |
|
||||||| ||| |||||| | | || | |||||||||||||||| ||||||| |
|
|
| T |
6366889 |
tctttcaaagagtgatctttcacgaaacgtcgccaaccgtccacgaaataaacag |
6366835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 6379378 - 6379264
Alignment:
| Q |
118 |
aaaataggaagccgctttctcacaaaagctttctccttgaaagattaacacattgaacaatgattcgccattgtacttaaagaccgcgaaatcattctct |
217 |
Q |
| |
|
|||||| ||||| |||||||| || ||||||||||| ||||||||||| || | |||| |||||| ||||||||||| ||||| ||||||||||| | |
|
|
| T |
6379378 |
aaaataagaagctgctttctcgcagaagctttctccatgaaagattaaaacctcaaacagtgattcaccattgtacttgaagacaaggaaatcattctgt |
6379279 |
T |
|
| Q |
218 |
ttcagagaatgatct |
232 |
Q |
| |
|
|||| ||| |||||| |
|
|
| T |
6379278 |
ttcaaagagtgatct |
6379264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 277
Target Start/End: Complemental strand, 6404341 - 6404177
Alignment:
| Q |
113 |
ccaacaaaataggaagccgctttctcacaaaagctttctccttgaaagattaacacattgaacaatgattcgccattgtacttaaagaccgcgaaatcat |
212 |
Q |
| |
|
||||||||||| |||| || |||||||||||| | |||| | ||||||||| || | || | |||||| |||||||||||||| || |||||||| |
|
|
| T |
6404341 |
ccaacaaaataagaagttgccttctcacaaaagttatctcgatcaaagattaaaacctcaaagagtgattcaccattgtacttaaaaacaaggaaatcat |
6404242 |
T |
|
| Q |
213 |
tctctttcagagaatgatctcttgcaaactgatgccaaccgtccacgaagtaaacagtattatct |
277 |
Q |
| |
|
||||||||| |||||||||| | |||| | |||||||||||| ||||||||| |||| |||| |
|
|
| T |
6404241 |
tctctttcaaagaatgatctttcacaaatcgttgccaaccgtccgtgaagtaaaccgtataatct |
6404177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 232
Target Start/End: Complemental strand, 6357714 - 6357595
Alignment:
| Q |
113 |
ccaacaaaataggaagccgctttctcacaaaagctttctccttgaaagattaacacattgaacaatgattcgccattgtacttaaagaccgcgaaatcat |
212 |
Q |
| |
|
||||||||||| ||||| || |||||||| || || ||||| ||||||||||| || | || | ||| || ||||||||||||||||| |||||||| |
|
|
| T |
6357714 |
ccaacaaaataagaagctgccttctcacagaaactatctccatgaaagattaaaacttcaaagagtgactccccattgtacttaaagacaaggaaatcat |
6357615 |
T |
|
| Q |
213 |
tctctttcagagaatgatct |
232 |
Q |
| |
|
||||||||| ||| |||||| |
|
|
| T |
6357614 |
tctctttcaaagagtgatct |
6357595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 6415749 - 6415675
Alignment:
| Q |
28 |
ctgctcaggggaagcagactcaacaccagcattaagaacagtgttgacttcttcaacagacttgtttgtttcctt |
102 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| || | |||| | || |||||| |||||||||||||| ||||| |
|
|
| T |
6415749 |
ctgctcaggggaagcagactccacacccgcatcaaaagcagtatcgatttcttccacagacttgtttgtgtcctt |
6415675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 268
Target Start/End: Complemental strand, 6349043 - 6348891
Alignment:
| Q |
116 |
acaaaataggaagccgctttctcacaaaagctttctccttgaaagattaacacattgaacaatgattcgccattgtacttaaagaccgcgaaatcattct |
215 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||||||||| | ||||||||| || | ||| |||||| |||||||||||| |||| ||||||||| |
|
|
| T |
6349043 |
acaaaataagaagcttctttctcacagaagctttctccatcaaagattaaaacctcgaagtgtgattcaccattgtacttacagacaaggaaatcattag |
6348944 |
T |
|
| Q |
216 |
ctttcagagaatgatctcttgcaaactgatgccaaccgtccacgaagtaaaca |
268 |
Q |
| |
|
|||||| || ||||| | || || |||||||||||||||||||||||| |
|
|
| T |
6348943 |
ctttcaacgagtgatcgttcatgaattgttgccaaccgtccacgaagtaaaca |
6348891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University