View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_high_19 (Length: 272)
Name: NF14005_high_19
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 256
Target Start/End: Original strand, 4149888 - 4150140
Alignment:
| Q |
4 |
atcaacactatccacttccctgcgtttcatgtgacactttaacatctcttaccctttgtagaaacgatcaattttgttatcattcaccattattcccaac |
103 |
Q |
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| T |
4149888 |
atcaacactatccacttccctacgtttcatgtcacactttaacatctcttaccctttgtacaaacaatcaatttggtcatccttcatcattattcccaac |
4149987 |
T |
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| Q |
104 |
ttctctgaatttgcctgcattaaccagcttgtgtctaaaatacttttcctttcatggtagtggtgatgataaccgtgctgagcccttttcgtcatttaac |
203 |
Q |
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| T |
4149988 |
ttctctgaatttgcctgcattaaccagcttgtgtctaaaatactttgcctttcatggtagtggtgatgatgaccgtgctgagcccttttcgtcatttaac |
4150087 |
T |
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| Q |
204 |
agcttgaaaagtttgatcattcactgttgtgttgaagaacaaaacctgttcat |
256 |
Q |
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| T |
4150088 |
agcttgaaaagtttgatcattcactgttgtgttcaagaacaaaacctgttcat |
4150140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 4 - 256
Target Start/End: Original strand, 4165660 - 4165912
Alignment:
| Q |
4 |
atcaacactatccacttccctgcgtttcatgtgacactttaacatctcttaccctttgtagaaacgatcaattttgttatcattcaccattattcccaac |
103 |
Q |
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| T |
4165660 |
atcaacactatccacttccctacgttttatgtcacactttaacatctcttaccctttgtacaaacaatcaatttggtcatccttcatcattattcccaac |
4165759 |
T |
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| Q |
104 |
ttctctgaatttgcctgcattaaccagcttgtgtctaaaatacttttcctttcatggtagtggtgatgataaccgtgctgagcccttttcgtcatttaac |
203 |
Q |
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| T |
4165760 |
ttctctgaatttgcctgcattaaccagcatgtgtctaaaatactttgcctttcatggtagtggtgatgatgaccgtgctgagcccttttcgtcatttaac |
4165859 |
T |
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| Q |
204 |
agcttgaaaagtttgatcattcactgttgtgttgaagaacaaaacctgttcat |
256 |
Q |
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| T |
4165860 |
agcttgaaaagtttgatcattcactgttgtgttgaagaacaaaacctgttcat |
4165912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 43863747 - 43863685
Alignment:
| Q |
109 |
tgaatttgcctgcattaaccagcttgtgtctaaaatacttttcctttcatggtagtggtgatg |
171 |
Q |
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| T |
43863747 |
tgaatttgccagcattaaccaccttgtctttaaagtacttttcctttcatcgcagtgatgatg |
43863685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 52187235 - 52187280
Alignment:
| Q |
104 |
ttctctgaatttgcctgcattaaccagcttgtgtctaaaatacttt |
149 |
Q |
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| T |
52187235 |
ttctctgaatttgccagcattaaccaacttgtctctaaagtacttt |
52187280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 7976438 - 7976378
Alignment:
| Q |
164 |
tggtgatgataaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcatt |
224 |
Q |
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| T |
7976438 |
tggtgataatgatcgtgctgagcctttttcgacatttaacaagttgaatagtttgatcatt |
7976378 |
T |
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