View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_high_27 (Length: 227)
Name: NF14005_high_27
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_high_27 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 31055152 - 31054928
Alignment:
| Q |
3 |
atcatgttcatgagacggacagtatttttggttccaataggggtgacacctatactcaatcaaaccagaaccatttataggtatctgcaagtgaaacaaa |
102 |
Q |
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| T |
31055152 |
atcatgttcatgagacggacagtatttttggttccaataggggtgacacctatactcaatcaaaccagaaccatttataggtatctgcaagtgaaacaaa |
31055053 |
T |
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| Q |
103 |
ttaacatgtattatagattatagttcaatagtaatagatacaaaggatataatgttttttactatgctagtcttctgatatatcaatggtaagctatgat |
202 |
Q |
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| T |
31055052 |
ttaacatgtattatagattatagttcaatagtaatagatacaaaggatataatgttttttactatgctagtcttctgatatatcaatggtaagctatgat |
31054953 |
T |
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| Q |
203 |
gccatatcaaatgattgattaatgt |
227 |
Q |
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| T |
31054952 |
gccatatcatatgattgattaatgt |
31054928 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 34743498 - 34743589
Alignment:
| Q |
3 |
atcatgttcatgagacggacagtatttttggttccaataggggtgacacctatactcaatcaaaccagaaccatttataggtatctgcaagt |
94 |
Q |
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| T |
34743498 |
atcatattcatgagatggacaatacttttgggaccaaaaggggtggcatctatactcaatcaaaccagcagcatttataggaatctgaaagt |
34743589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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