View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14005_high_4 (Length: 584)

Name: NF14005_high_4
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14005_high_4
NF14005_high_4
[»] chr1 (19 HSPs)
chr1 (1-577)||(6390640-6391215)
chr1 (1-162)||(6380298-6380459)
chr1 (1-172)||(6372230-6372400)
chr1 (1-149)||(6399329-6399477)
chr1 (6-174)||(6404027-6404195)
chr1 (16-165)||(6379078-6379227)
chr1 (1-173)||(6366678-6366850)
chr1 (6-162)||(6415329-6415485)
chr1 (6-162)||(6358786-6358942)
chr1 (2-162)||(6420486-6420646)
chr1 (21-152)||(6348754-6348885)
chr1 (6-173)||(6357401-6357568)
chr1 (6-134)||(6427852-6427980)
chr1 (6-155)||(6347660-6347809)
chr1 (178-247)||(6348608-6348677)
chr1 (186-248)||(6380090-6380152)
chr1 (180-234)||(6415209-6415263)
chr1 (180-234)||(6420367-6420421)
chr1 (184-234)||(6399227-6399277)
[»] chr8 (2 HSPs)
chr8 (312-390)||(23491982-23492058)
chr8 (311-367)||(30453863-30453919)
[»] chr6 (1 HSPs)
chr6 (313-369)||(2544940-2544995)


Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 6391215 - 6390640
Alignment:
Q  1 tccacgaagtaaacagtattatctctagtttgcagccctacattccattcaactccactaggacctttaagggtcacattttctggcaacttcttcttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6391215 tccacgaagtaaacagtattatctctagtttgcagccctacattccattcaactccactaggacctttaagggtcacattttctggcagcttcttcttca 6391116  T
Q  101 aattgtctgagaatgttctaggaagtgcctgcaataaaatgataaatttccatttgagattatgatacattgaactcaacataattatttgcttgaaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6391115 aattgtctgagaatgttctaggaagtgcctgcaataaaatgataaatttccatttgagattatgatacattgaactcaacataattatttgcttgaaaaa 6391016  T
Q  201 ccgctattaatcatcacaggtacatgatttacatcgatagtgtttgcaacaacaacaactatcctgcctatgttcacgactgcatcatcacaagcctaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  6391015 ccgctattaatcatcacaggtacatgatttacatcgatagtgtttgcaacaacaacagctatcctgcctatgttcatgactgcatcatcacaagcctaaa 6390916  T
Q  301 ccctaaactcgataaaaggagaaggttgtgttagacagtcaacaaccaacgtaaaactttgtcgaattttttatgacattggatcaaatatgttatagat 400  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6390915 ccctaaactcgataaaaggagagggttgtgttagacagtcaacaaccaacgtaaaactttgtcgaattttttatgaca-tggatcaaatatgttatagat 6390817  T
Q  401 agtgtttgcagaacatgtaaaaataaaattaatccgttatttaaaaactacactacaatctctttattcatttcctttaagctagaaaagcatgaattta 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6390816 agtgtttgcagaacatgtaaaaataaaattaatccgttatttaaaaactacactacaatctccttattcatttcctttaagctagaaaagcatgaattta 6390717  T
Q  501 ataaaaccagattgttgaaacggcgtagttttggaccttttataagaaaaaagtaccaaaatgtgctccaggttcat 577  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6390716 ataaaaccagattgttgaaacggcgtagttttggaccttttataagaaaaaagtaccaaaatgtgctccaagttcat 6390640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 6380459 - 6380298
Alignment:
Q  1 tccacgaagtaaacagtattatctctagtttgcagccctacattccattcaactccactaggacctttaagggtcacattttctggcaacttcttcttca 100  Q
    ||||| ||||||||| ||| ||||||||||  |||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6380459 tccacaaagtaaacaatatcatctctagttgtcagccctatattccacacaactccactaggacctttaagggtcacattttctggcaacttcttcttta 6380360  T
Q  101 aattgtctgagaatgttctaggaagtgcctgcaataaaatgataaatttccatttgagatta 162  Q
    ||||||||||||||||| ||||||||||||||||| |||  |||||||||||| ||||||||    
T  6380359 aattgtctgagaatgttttaggaagtgcctgcaattaaaatataaatttccatctgagatta 6380298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 6372400 - 6372230
Alignment:
Q  1 tccacgaagtaaacagtattatctctagtttgcagccctacattccattcaactccactaggacctttaagggtcacattttctggcaacttcttcttca 100  Q
    |||| |||||| ||||||| || |||||||  |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6372400 tccatgaagtacacagtatcatttctagttgtcagccctatattccatacaactccactaggacctttaagggtcacattttctggcaacttcttcttta 6372301  T
Q  101 aattgtctgagaatgttctaggaagtgcctgcaataaaatgataaatttccatttgagattatgatacattg 172  Q
    | ||||||||||||||| |||||||||||||| ||||||  ||||||||||||||||||||| |||| ||||    
T  6372300 agttgtctgagaatgttttaggaagtgcctgc-ataaaagtataaatttccatttgagattaagataaattg 6372230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 6399477 - 6399329
Alignment:
Q  1 tccacgaagtaaacagtattatctctagtttgcagccctacattccattcaactccactaggacctttaagggtcacattttctggcaacttcttcttca 100  Q
    ||||||||||||||||||||||||||||||  ||| |||| ||||||  |||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  6399477 tccacgaagtaaacagtattatctctagttgtcagtcctatattccacacaactccactaggacctttaagagtcacattttctggcaacttcttcttta 6399378  T
Q  101 aattgtctgagaatgttctaggaagtgcctgcaataaaatgataaattt 149  Q
    |||||||||| |||||| ||||||||||||||||| |||  ||||||||    
T  6399377 aattgtctgaaaatgttttaggaagtgcctgcaattaaaatataaattt 6399329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 6 - 174
Target Start/End: Complemental strand, 6404195 - 6404027
Alignment:
Q  6 gaagtaaacagtattatctctagtttgcagccctacattccattcaactccactaggacctttaagggtcacattttctggcaacttcttcttcaaattg 105  Q
    ||||||||| |||| ||||||||||  ||| |||| ||||||  |||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  6404195 gaagtaaaccgtataatctctagttgtcagtcctatattccaaacaactccactaggacctttaagggtcacattttcaggcaacttgttctttaaattg 6404096  T
Q  106 tctgagaatgttctaggaagtgcctgcaataaaatgataaatttccatttgagattatgatacattgaa 174  Q
    ||||| |||||| ||||||||||||||||| |||  |||||||||| ||||| |||| |||||||||||    
T  6404095 tctgaaaatgttttaggaagtgcctgcaattaaaacataaatttccttttgatattaagatacattgaa 6404027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 6379227 - 6379078
Alignment:
Q  16 gtattatctctagtttgcagccctacattccattcaactccactaggacctttaagggtcacattttctggcaacttcttcttcaaattgtctgagaatg 115  Q
    |||| ||||||||||  |||||||| || |||  |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||    
T  6379227 gtatcatctctagttgtcagccctatatcccacacaactccactaggacctttaagggtcacatttgctggcaacttgttctttaaattgtctgaaaatg 6379128  T
Q  116 ttctaggaagtgcctgcaataaaatgataaatttccatttgagattatga 165  Q
    || |||||||||||||||||||||  |||||||||||||||||| |||||    
T  6379127 ttttaggaagtgcctgcaataaaagtataaatttccatttgagactatga 6379078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 6366850 - 6366678
Alignment:
Q  1 tccacgaagtaaacagtattatctctagtttgcagccctacattccattcaactccactaggacctttaagggtcacattttctggcaacttcttcttca 100  Q
    |||||||| |||||||  | | ||||||| | |||||||| ||||||  |||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  6366850 tccacgaaataaacagattcacctctagtattcagccctatattccacacaactccactaggacctttaagtgtcacattttctggcaacttcttcttta 6366751  T
Q  101 aattgtctgagaatgttctaggaagtgcctgcaataaaatgataaatttccatttgagattatgatacattga 173  Q
    ||||||| |||||| || ||||||| |||||||||||| | ||||||||||| |||||| || ||||||||||    
T  6366750 aattgtccgagaatattttaggaagggcctgcaataaatttataaatttccagttgagactaagatacattga 6366678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 6 - 162
Target Start/End: Complemental strand, 6415485 - 6415329
Alignment:
Q  6 gaagtaaacagtattatctctagtttgcagccctacattccattcaactccactaggacctttaagggtcacattttctggcaacttcttcttcaaattg 105  Q
    |||||||||||| | |||| |||||  |||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  6415485 gaagtaaacagtgtcatctatagttgtcagccctatattccacacaactccactaggacctttaagggtcacattttctggcaacttcttctttaagttg 6415386  T
Q  106 tctgagaatgttctaggaagtgcctgcaataaaatgataaatttccatttgagatta 162  Q
    ||||| |||||| ||||||||||||||||| |||  | |||||||||| ||||||||    
T  6415385 tctgaaaatgttttaggaagtgcctgcaattaaaatacaaatttccatctgagatta 6415329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 6 - 162
Target Start/End: Complemental strand, 6358942 - 6358786
Alignment:
Q  6 gaagtaaacagtattatctctagtttgcagccctacattccattcaactccactaggacctttaagggtcacattttctggcaacttcttcttcaaattg 105  Q
    ||||||||||||||  |||||||||   |||||||  |||||| |||| ||||  ||||||||||||||||||||||||||||||||||| || ||||||    
T  6358942 gaagtaaacagtatcgtctctagttatgagccctattttccatgcaacaccaccgggacctttaagggtcacattttctggcaacttcttatttaaattg 6358843  T
Q  106 tctgagaatgttctaggaagtgcctgcaataaaatgataaatttccatttgagatta 162  Q
    ||||| |||||| |||||||||||||||||||||  ||||||||| |||||||||||    
T  6358842 tctgaaaatgttttaggaagtgcctgcaataaaagtataaatttcaatttgagatta 6358786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 6420646 - 6420486
Alignment:
Q  2 ccacgaagtaaacagtattatctctagtttgcagccctacattccattcaactccactaggacctttaagggtcacattttctggcaacttcttcttcaa 101  Q
    |||||||||||||||||||||||||||||  || ||| | || |||  || ||||||||||||| ||||||||||||||||||||||||||||| || ||    
T  6420646 ccacgaagtaaacagtattatctctagttgtcaacccaatatcccacacagctccactaggacccttaagggtcacattttctggcaacttcttttttaa 6420547  T
Q  102 attgtctgagaatgttctaggaagtgcctgcaataaaatgataaatttccatttgagatta 162  Q
    ||||||||| |||||| ||||||||||||||| | |||  |||||||||||| ||||||||    
T  6420546 attgtctgaaaatgttttaggaagtgcctgcagttaaaatataaatttccatctgagatta 6420486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 6348885 - 6348754
Alignment:
Q  21 atctctagtttgcagccctacattccattcaactccactaggacctttaagggtcacattttctggcaacttcttcttcaaattgtctgagaatgttcta 120  Q
    ||||||||||  ||||| || |||||||  ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||    
T  6348885 atctctagttgtcagccttatattccatgtaactccactaggacctttaagggtcacattttctggcaacttcttatttaaattgtctgaaaatgtttta 6348786  T
Q  121 ggaagtgcctgcaataaaatgataaatttcca 152  Q
    |||||||||||||||||||  |||||||||||    
T  6348785 ggaagtgcctgcaataaaagtataaatttcca 6348754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 6357568 - 6357401
Alignment:
Q  6 gaagtaaacagtattatctctagtttgcagccctacattccattcaactccactaggacctttaagggtcacattttctggcaacttcttcttcaaattg 105  Q
    ||||||||  |||| |||||||| |  |||||| ||||||||  |||||||||||||||||||||||||||| ||  |||||||||||||||| ||||||    
T  6357568 gaagtaaatggtatcatctctagctgtcagcccaacattccacacaactccactaggacctttaagggtcacgttgcctggcaacttcttctttaaattg 6357469  T
Q  106 tctgagaatgttctaggaagtgcctgcaataaaatgataaatttccatttgagattatgatacattga 173  Q
    ||||| |||||| | ||||| |||||||||||| | ||| ||||||| |||||| || || |||||||    
T  6357468 tctgaaaatgttttcggaagggcctgcaataaatttatagatttccagttgagactaagaaacattga 6357401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 6 - 134
Target Start/End: Complemental strand, 6427980 - 6427852
Alignment:
Q  6 gaagtaaacagtattatctctagtttgcagccctacattccattcaactccactaggacctttaagggtcacattttctggcaacttcttcttcaaattg 105  Q
    |||||||||||| |  ||| |||||  |||||||| ||||||  ||||||||||||||||||||||| |||||||||| ||||||||||| || ||||||    
T  6427980 gaagtaaacagtgtcctctttagttgtcagccctatattccacacaactccactaggacctttaaggttcacattttcaggcaacttcttttttaaattg 6427881  T
Q  106 tctgagaatgttctaggaagtgcctgcaa 134  Q
    ||||| |||||| ||||||||||||||||    
T  6427880 tctgaaaatgttttaggaagtgcctgcaa 6427852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 6 - 155
Target Start/End: Complemental strand, 6347809 - 6347660
Alignment:
Q  6 gaagtaaacagtattatctctagtttgcagccctacattccattcaactccactaggacctttaagggtcacattttctggcaacttcttcttcaaattg 105  Q
    |||||||||||||| | |||||| |  |||||||| ||||||  ||| ||| ||||||| ||||| ||||||||||||||| ||||||||||| ||||||    
T  6347809 gaagtaaacagtatcacctctagctgtcagccctatattccacacaattccgctaggacatttaatggtcacattttctggtaacttcttctttaaattg 6347710  T
Q  106 tctgagaatgttctaggaagtgcctgcaataaaatgataaatttccattt 155  Q
    ||||| |||||| | |||||||||||||| ||||  |||||| |||||||    
T  6347709 tctgaaaatgttttcggaagtgcctgcaacaaaagtataaatgtccattt 6347660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 6348677 - 6348608
Alignment:
Q  178 aacataattatttgcttgaaaaaccgctattaatcatcacaggtacatgatttacatcgatagtgtttgc 247  Q
    ||||||||||||||||||| |||| || |||||||||| || ||||||||||||||| ||||||||||||    
T  6348677 aacataattatttgcttgagaaacagccattaatcatctcaagtacatgatttacatagatagtgtttgc 6348608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 6380152 - 6380090
Alignment:
Q  186 tatttgcttgaaaaaccgctattaatcatcacaggtacatgatttacatcgatagtgtttgca 248  Q
    |||||||||||||||| ||||||||||||| |  |||||||||||||||  |||||| |||||    
T  6380152 tatttgcttgaaaaacagctattaatcatctccagtacatgatttacataaatagtggttgca 6380090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 6415263 - 6415209
Alignment:
Q  180 cataattatttgcttgaaaaaccgctattaatcatcacaggtacatgatttacat 234  Q
    |||||| ||||||||||||||| |||||||||||||  | |||||||||||||||    
T  6415263 cataataatttgcttgaaaaacagctattaatcatctaatgtacatgatttacat 6415209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 6420421 - 6420367
Alignment:
Q  180 cataattatttgcttgaaaaaccgctattaatcatcacaggtacatgatttacat 234  Q
    |||||| ||||||||||||||| ||||||||||||| || |||||||||| ||||    
T  6420421 cataataatttgcttgaaaaacagctattaatcatctcaagtacatgattcacat 6420367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 6399277 - 6399227
Alignment:
Q  184 attatttgcttgaaaaaccgctattaatcatcacaggtacatgatttacat 234  Q
    |||||||||||||||||| ||||||||||||| |  ||||||| |||||||    
T  6399277 attatttgcttgaaaaacagctattaatcatctctagtacatggtttacat 6399227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 23492058 - 23491982
Alignment:
Q  312 ataaaaggagaaggttgtgttagacagtcaacaaccaacgtaaaactttgtcgaattttttatgacattggatcaaata 390  Q
    |||||||||||  ||||||||||  ||||||||||||||| |||||||||| ||| ||| ||||||| |||||||||||    
T  23492058 ataaaaggagagagttgtgttaggaagtcaacaaccaacggaaaactttgttgaa-tttctatgaca-tggatcaaata 23491982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 30453919 - 30453863
Alignment:
Q  311 gataaaaggagaaggttgtgttagacagtcaacaaccaacgtaaaactttgtcgaat 367  Q
    ||||||| |||| ||||||||||| ||||  |||||||||||||||||| |||||||    
T  30453919 gataaaaagagagggttgtgttaggcagttgacaaccaacgtaaaacttagtcgaat 30453863  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 369
Target Start/End: Complemental strand, 2544995 - 2544940
Alignment:
Q  313 taaaaggagaaggttgtgttagacagtcaacaaccaacgtaaaactttgtcgaattt 369  Q
    ||||||||||||||||||||||||| |  |||  |||||||||||||||| ||||||    
T  2544995 taaaaggagaaggttgtgttagaca-ttgacagtcaacgtaaaactttgtggaattt 2544940  T

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