View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_high_5 (Length: 565)
Name: NF14005_high_5
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 7 - 547
Target Start/End: Complemental strand, 456931 - 456391
Alignment:
| Q |
7 |
tccaagaatatctctcaatccaacggttattttctcagcatcactggtttcaatagcgtcaacgccgtcggtggactcttcctatgtcgtggcgacgtcg |
106 |
Q |
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| T |
456931 |
tccaataatatctctcaatccaacggttattttctcggcatcactggtttcaatagcgtcaacgccgtcggtggactcttcctatgtcgtggcgacgtcg |
456832 |
T |
|
| Q |
107 |
ccaccaccgtatgtaaccagtgtctcacaactgcaatcaaagagataagacagcattgtccaaaccaaaccgaagcactcatctggtacgacgagtgctt |
206 |
Q |
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| T |
456831 |
ccaccaccgtatgtaaccagtgtctcacaactgcaatcaaagagataagacagcattgtccaaaccaaaccgaagcactcatctggtacgacgagtgctt |
456732 |
T |
|
| Q |
207 |
cgttcgttacacaaataggtactttgccgtcgacaagattgaccctagagtcaaccttaacgacggaaatattgtctctagcgttgacttgggacgtttc |
306 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
456731 |
ggttcattacacaaataggtactttgccgtcgacaagattgaccctagagtcaaccttaacgacggaaatattgtctctagcgttgacttgggacgtttc |
456632 |
T |
|
| Q |
307 |
aaccaatctctgcatgggttgttgaatgatttggcaacagaagcctccgggagttctgagtcgaagaagtttgctgccggtgaagtagtggtgacggagt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
456631 |
aaccaatctctgcatgggttgttgaatgatttggcaacagaagcctccgggagttctgagtcgaagaagtttgccgccggtgaagtagtggtgacggagt |
456532 |
T |
|
| Q |
407 |
ccatgacggtgtatggattgatgcagtgcacgaatgacttaacgaatagtgaatgtgggacgtgtttgaaaaatgctattggaactattcctaatggaaa |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
456531 |
ccatgacggtgtatggattgatgcagtgcacgaatgacttaacgaatagtgaatgtgggacgtgtttgaaaaatgctattggaactattcctaatggaaa |
456432 |
T |
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| Q |
507 |
acagggtgcaagagctttgcttccttcttgtaatgttagat |
547 |
Q |
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| T |
456431 |
acagggtgcaagagctttgcttccttcttgtaatgttagat |
456391 |
T |
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