View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_high_6 (Length: 561)
Name: NF14005_high_6
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Original strand, 39559866 - 39560410
Alignment:
| Q |
1 |
tgaactcaagaagataatttcttccccacgcacatgcttttctaaaaacacacgatctctctggattacataattcaaatgtgtaaaaaacgtttgtttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39559866 |
tgaactcaagaagataatttcttccccacgcacacgcttttctaaaaacacacgatctctctggattacataattcaaatgtgtaaaaaaagtttgtttt |
39559965 |
T |
|
| Q |
101 |
cttgcaagcttgaaaagtgtaatccaaacaaatcgcgtgttttataaaatacgttggggagaagaaatcttcaatatcttattacatgtttagagtatta |
200 |
Q |
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| T |
39559966 |
cttgcaagcttgaaaagtgtaatccaaacaaatcgcgtgttttataaaatacgttggggagaagaaatcttcaatatcttattacatgtttagagtatta |
39560065 |
T |
|
| Q |
201 |
tgcacattagctcaatttatgttggagagtgaggagttaatggagtgggtatattgaaatgcctaacaaacaactaatgtcgccatgatcatatctcctt |
300 |
Q |
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| T |
39560066 |
tgcacattagctcaatttatgttggagagtgaggagttaatggagtgggtatattgaaatgcctaacaaacaactaatgtcgccatgatcatatctcctt |
39560165 |
T |
|
| Q |
301 |
ttgcaggataattaatgtaacatgtataatcaaattggagttctttctttacaagaggctctctaatggaggttaatttggctttctatattggatgggt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39560166 |
ttgcaggataattaatgtaacatgtataatcaaattggagttctttctttacaagaggcactctaatggaggttaatttggctttctatattggatgggt |
39560265 |
T |
|
| Q |
401 |
aaaagtgttggcatgccactctttaatgttattttctgttatatatatttactcagcaatttgtaagatcctagtctaaactcattatataaccgttggt |
500 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39560266 |
aaaagtgttggcatgccactctttaatg-tattttctgttatatatatttactcagcaatttgtaagatcctagtctaaactcattatataaccgttggt |
39560364 |
T |
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| Q |
501 |
tatgccttggtctatgttgcattcgaatacaagtcatataagtata |
546 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39560365 |
tatgccttggtctatgttgcattcgaatacaagtcatataagtata |
39560410 |
T |
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