View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_low_1 (Length: 955)
Name: NF14005_low_1
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 73 - 533
Target Start/End: Original strand, 1036809 - 1037269
Alignment:
| Q |
73 |
aaataagcccaataacccaatattattcctatttgcactccacctcttcattaagtgactttctccacgagtggctcttcttaattttccaactgtcgcg |
172 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1036809 |
aaataagcccaataacccaatattattcctatttgcactccacctcttcattaagtgactttctccacgagtggctcttcttaattttccaactgtcgcg |
1036908 |
T |
|
| Q |
173 |
acacgatctttgtagtatacaatgcgatttaaatagtgatgaaacacttctgaactttcctatatctcgcgaagcgggtgaggcaatggcgaaacacttc |
272 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1036909 |
acacgatctttgtagtatacgatgcgatttaaatagtgatgaaacacttctgaactttcgtatatctcgcgaagcgggtgaggcaatggcgaaacacttc |
1037008 |
T |
|
| Q |
273 |
taactttccatcagtatcacggtgcgtggctcgttgcaagggacacgagtcaggacgaggctaatccttatgcttttctttattcattgtctcatttatc |
372 |
Q |
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|||||||||||| ||||||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1037009 |
taactttccatcggtatcacggtgtgtggctcattggaagggacacgagtcgggacgaggctaatccttatgcttttctttattcattgtctcatttatc |
1037108 |
T |
|
| Q |
373 |
ttcactgaaacgtctgtaataactatgccccaaaatttaacatgtcaaaacttgtaataagcatagtacaatcacgaagttgtctagtttgggtatattg |
472 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
1037109 |
ctcactgaaacgtctataataactatgccccaaaatttaacatgtcaaaacttgtaataagcatagtacagtcacaaagttgtctagtttgggtatattt |
1037208 |
T |
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| Q |
473 |
ttatagtttcaaagttattttcccatttatactcttgcatgacctttgaacaatcctttac |
533 |
Q |
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| T |
1037209 |
ttatagtttcaaagttattttcccatttatactcttgcatgacttttgatcgatcctttac |
1037269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 596 - 939
Target Start/End: Original strand, 1037329 - 1037676
Alignment:
| Q |
596 |
cctatataatttcatgtcatcaaggtgcattatcaacacgagggttctgatggatatgtgtctgaggttcatgtgagagatcatctaaaacagtaaggtg |
695 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1037329 |
cctatataatttcatgtcatcaagttgcattatcaacacaagggttctgatggatatgtgtctgaggttcatgtgagagatcatctaaaacagtaaggtg |
1037428 |
T |
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| Q |
696 |
tgtaataggtgaactgg----agttctgagatagaaaatagttccaattagaagtaacacacatatatgatttatagtatggcaaaacatgctcatggaa |
791 |
Q |
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| T |
1037429 |
tgtaataggtgaactggctggagttctgagatagaaaatagttccaattagaagtaacacacatatatgatttatagtatggcaaaacatgctcatggaa |
1037528 |
T |
|
| Q |
792 |
tgcgacattgcgtgtaacaaatatttctctggagtttaaatcaagaagaacattgcctttgtaacttgacttatatctcaagaatagagactttttggct |
891 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
1037529 |
tgcgacattgcgtgtaacaaatatttctctggagtttaaatcaagaagaacatagcctttgtaacttgacttatatcccaagaatagaaactttttggct |
1037628 |
T |
|
| Q |
892 |
ttaggataatgtttgggtctgtgtgattggagagtggaggcatagcat |
939 |
Q |
| |
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|||||||||||||||| |||||||||| |||||||||| |||||||| |
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| T |
1037629 |
ttaggataatgtttggttctgtgtgatctgagagtggagacatagcat |
1037676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 380 - 500
Target Start/End: Original strand, 24763426 - 24763546
Alignment:
| Q |
380 |
aaacgtctgtaataactatgccccaaaatttaacatgtcaaaacttgtaataagcatagtacaatcacgaagttgtctagtttgggtatattgttatagt |
479 |
Q |
| |
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||||||| ||||| | ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| ||| || || |
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| T |
24763426 |
aaacgtccgtaatgattataccccaaaatttaacatgataaaacttgtaataagcatatcttggtcacgaagttgactagtttgggtgaatttccatggt |
24763525 |
T |
|
| Q |
480 |
ttcaaagttattttcccattt |
500 |
Q |
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|||||||| |||||||||||| |
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| T |
24763526 |
ttcaaagtcattttcccattt |
24763546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 419 - 465
Target Start/End: Original strand, 4962783 - 4962829
Alignment:
| Q |
419 |
aaaacttgtaataagcatagtacaatcacgaagttgtctagtttggg |
465 |
Q |
| |
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||||| |||||||||||||||||| | || ||||||||||||||||| |
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| T |
4962783 |
aaaacctgtaataagcatagtacagttacaaagttgtctagtttggg |
4962829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 378 - 467
Target Start/End: Original strand, 9025848 - 9025937
Alignment:
| Q |
378 |
tgaaacgtctgtaataactatgccccaaaatttaacatgtcaaaacttgtaataagcatagtacaatcacgaagttgtctagtttgggta |
467 |
Q |
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||||| ||||||||| | ||| |||||| |||||||| |||| |||| |||| |||||||||||||| |||||||||||||||||| |
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| T |
9025848 |
tgaaatgtctgtaatgattataccccaagtattaacatgataaaaattgtgataaacatagtacaatcacagagttgtctagtttgggta |
9025937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 419 - 466
Target Start/End: Original strand, 34119849 - 34119896
Alignment:
| Q |
419 |
aaaacttgtaataagcatagtacaatcacgaagttgtctagtttgggt |
466 |
Q |
| |
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||||||||||||||| ||||||| |||| |||||||||||||||||| |
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| T |
34119849 |
aaaacttgtaataagtatagtacggtcacaaagttgtctagtttgggt |
34119896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 463
Target Start/End: Original strand, 16649305 - 16649442
Alignment:
| Q |
326 |
gacgaggctaatccttatgcttttctttattcattgtctcatttatcttcactgaaacgtctgtaataactatgccccaaaatttaacatgtcaaaactt |
425 |
Q |
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||||||| | |||||| ||||||||||||||| || || ||||| | |||| ||| || ||||| ||||| ||| || | |||||||| |||| || |
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| T |
16649305 |
gacgaggttgatccttttgcttttctttattccttatcacatttcttatcaccaaaatgtatgtaacgactataccctaataattaacatgataaaaatt |
16649404 |
T |
|
| Q |
426 |
gtaataagcatagtacaatcacgaagttgtctagtttg |
463 |
Q |
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| T |
16649405 |
gtaataaatatagtatgatcacgaggttgtctagtttg |
16649442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 464
Target Start/End: Original strand, 16380300 - 16380421
Alignment:
| Q |
343 |
tgcttttctttattcattgtctcatttatcttcactgaaacgtctgtaataactatgccccaaaatttaacatgtcaaaacttgtaataagcatagtaca |
442 |
Q |
| |
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|||||||||| |||| ||||| |||| || |||| |||| ||| ||||| ||||| |||||| | |||||||| ||||||| || ||||||||||||| |
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| T |
16380300 |
tgcttttcttcattctctgtcttatttctcatcaccgaaatgtcggtaatgactataccccaagaattaacatgctaaaacttatagtaagcatagtaca |
16380399 |
T |
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| Q |
443 |
atcacgaagttgtctagtttgg |
464 |
Q |
| |
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| | ||||||||| |||||| |
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| T |
16380400 |
gttataaagttgtctggtttgg |
16380421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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