View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14005_low_11 (Length: 448)

Name: NF14005_low_11
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14005_low_11
NF14005_low_11
[»] chr4 (5 HSPs)
chr4 (188-396)||(39711877-39712085)
chr4 (2-64)||(39712202-39712264)
chr4 (192-282)||(32613783-32613873)
chr4 (86-122)||(39712145-39712181)
chr4 (192-282)||(35689930-35690018)
[»] chr2 (2 HSPs)
chr2 (205-281)||(3536701-3536777)
chr2 (198-282)||(9150260-9150344)
[»] chr1 (1 HSPs)
chr1 (192-238)||(28651548-28651594)
[»] chr6 (1 HSPs)
chr6 (192-274)||(34908365-34908446)
[»] chr3 (1 HSPs)
chr3 (215-285)||(26594402-26594472)
[»] chr8 (1 HSPs)
chr8 (192-224)||(2385964-2385996)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 188 - 396
Target Start/End: Complemental strand, 39712085 - 39711877
Alignment:
Q  188 caactgtaccatctaattaatactatgtgcatcactctaaaattattattcattactttgcattaatgataatgaaaatatatcaatagttaatatgaat 287  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712085 caactgtactatctaattaatactatgtgcatcactctaaaattattattctttactttgcattaatgataatgaaaatatatcaatagttaatatgaat 39711986  T
Q  288 gcacctttcnnnnnnnnnnnnnnnntaaggatgcaatattatcacannnnnnnnctttcatctatggtattttcttaatttgtatgaaataatcaaatat 387  Q
    |||||||||                |||||||| |||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||    
T  39711985 gcacctttcaaaaaataaaataaaataaggatgtaatattatcactttttttttctttcatctatggtattttcttaatttgtatgaaataatcaaatat 39711886  T
Q  388 catacttat 396  Q
    |||| ||||    
T  39711885 catatttat 39711877  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 39712264 - 39712202
Alignment:
Q  2 taagaaacaagaacagattttatgaagattagaaacaaaatttcctatattttcggcataaag 64  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  39712264 taagaaacaagaacaaattttatgaagattagaaacaaaatttcctatattttcagcataaag 39712202  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 282
Target Start/End: Complemental strand, 32613873 - 32613783
Alignment:
Q  192 tgtaccatctaattaatactatgtgcatcactctaaaattattattcattactttgcattaatgataatgaaaatatatcaatagttaata 282  Q
    |||||||||||| |||||| |||||||||||||  || ||||||||   |||||| |||| ||||||||||||||| |||||| |||||||    
T  32613873 tgtaccatctaactaatacaatgtgcatcactcccaagttattattttctacttttcatttatgataatgaaaatacatcaatggttaata 32613783  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 39712181 - 39712145
Alignment:
Q  86 ctttgataattcttctcttctatatcacatttggaag 122  Q
    |||||||||||||||||||||||||||||||| ||||    
T  39712181 ctttgataattcttctcttctatatcacatttagaag 39712145  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 282
Target Start/End: Original strand, 35689930 - 35690018
Alignment:
Q  192 tgtaccatctaattaatactatgtgcatcactctaaaattattattcattactttgcattaatgataatgaaaatatatcaatagttaata 282  Q
    |||||||||||||||| ||||||  ||| ||||  |  ||||||||  | |||||||||| |||||||||||| || ||||||||||||||    
T  35689930 tgtaccatctaattaaaactatg--cattactcccaggttattatttttaactttgcatttatgataatgaaagtacatcaatagttaata 35690018  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 3536777 - 3536701
Alignment:
Q  205 taatactatgtgcatcactctaaaattattattcattactttgcattaatgataatgaaaatatatcaatagttaat 281  Q
    ||||| ||| ||||||||||| || ||||||||||  |||||||||| |||||||| |||| |||||||||||||||    
T  3536777 taatattatatgcatcactcttaagttattattcaccactttgcatttatgataataaaaaaatatcaatagttaat 3536701  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 9150260 - 9150344
Alignment:
Q  198 atctaattaatactatgtgcatcactctaaaattattattcattactttgcattaatgataatgaaaatatatcaatagttaata 282  Q
    |||||||||||||||||||||||||||  ||||||||||||   ||||   | ||||||||||||||||| | |||| |||||||    
T  9150260 atctaattaatactatgtgcatcactcccaaattattattctgcacttaatagtaatgataatgaaaatacaccaatggttaata 9150344  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 28651594 - 28651548
Alignment:
Q  192 tgtaccatctaattaatactatgtgcatcactctaaaattattattc 238  Q
    |||||||| ||||||||||||||||||||||||| || |||||||||    
T  28651594 tgtaccatgtaattaatactatgtgcatcactctcaatttattattc 28651548  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 34908365 - 34908446
Alignment:
Q  192 tgtaccatctaattaatactatgtgcatcactctaaaattattattcattactttgcattaatgataatgaaaatatatcaat 274  Q
    ||||||||||||||||||||||| |||||||||  || | || |||  | |||||||||| |||||| |||||||| ||||||    
T  34908365 tgtaccatctaattaatactatgagcatcactcccaagtaatcatt-ttcactttgcatttatgatagtgaaaatacatcaat 34908446  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 26594472 - 26594402
Alignment:
Q  215 tgcatcactctaaaattattattcattactttgcattaatgataatgaaaatatatcaatagttaatatga 285  Q
    |||||||| || || |||| |||| |||||| ||||| ||||||||||||||| | ||||| |||||||||    
T  26594472 tgcatcacccttaagttataattctttacttagcatttatgataatgaaaatacaccaataattaatatga 26594402  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 2385964 - 2385996
Alignment:
Q  192 tgtaccatctaattaatactatgtgcatcactc 224  Q
    |||||||||||| ||||||||||||||||||||    
T  2385964 tgtaccatctaactaatactatgtgcatcactc 2385996  T

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