View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_low_13 (Length: 351)
Name: NF14005_low_13
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_low_13 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 49007803 - 49008153
Alignment:
| Q |
1 |
ctctctatccggggaatttttcttcaggcaaggtcccaatggttttcttgaactcatgtgataatttgaaagaactcatcagagcaagaaacaagatcgt |
100 |
Q |
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| T |
49007803 |
ctctctatccggggaatttttcttcaggcaaggtcccaatggttttcttgagctcatgtgataatttgaaagaactcatcagagcaagaaacaagatcgt |
49007902 |
T |
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| Q |
101 |
ggtgtgtgaagacaagaaccgaacacttgctactcaagtggataacttggacagaataaaagttgttgcgggtgttttcatatcaaatagttctgaggat |
200 |
Q |
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| T |
49007903 |
ggtgtgtgaagacaagaaccgaacacttgctactcaagtggataacttggacagaataaaagttgttgcgggtgttttcatatcaaatagttctgaggat |
49008002 |
T |
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| Q |
201 |
ataacatattacattcaaactaagtttccatctannnnnnngaatccaattaatggagaacttatcaaggatttcattaagtgcaatactaatccaaaag |
300 |
Q |
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| T |
49008003 |
ataacatattacattcaaactaagtttccatctatttttttgaatccaattaatggagaacttatcaaggatttcattaagtgcaatactaatccaaaag |
49008102 |
T |
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| Q |
301 |
caagcatgcaatttaataaaactgttttaggtacaaaaccagcaccaagtg |
351 |
Q |
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| T |
49008103 |
caagcatgcaatttaataaaactgttttaggtacaaaaccagcaccaagtg |
49008153 |
T |
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