View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_low_14 (Length: 338)
Name: NF14005_low_14
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_low_14 |
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| [»] scaffold0729 (1 HSPs) |
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| [»] scaffold0552 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 6594049 - 6593736
Alignment:
| Q |
1 |
tacaagaattggagaaaataactcagtgttgccaaacctcagatttcgttgttctgcctgtgttctatcatcacggtgtctctcccttcttctatcatgg |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||||| |
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| T |
6594049 |
tacaagaattggagaaaataactcagtgttgccgaacctcagatttggttgttctgcctgtgttctatcaa---ggtgtcggtcccttct---atcatgg |
6593956 |
T |
|
| Q |
101 |
agatatgtttggaggaaacgcttttcgtgattttcttgatagaatatcaatggaggaaacctctaaagaagaagacaagctcatgacctgggtagcagcg |
200 |
Q |
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|||||||||||||||| || |||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6593955 |
agatatgtttggaggagacacttttcatgattttctggatagaatatcaatggaggaaatctctaaagaagaagacaagctcatgacctgggtagcagcg |
6593856 |
T |
|
| Q |
201 |
atcactaaagctaacagatatttaggatcacgtgatctcatactcaaacccgtatacaggtaattttaagttcttttttaaaataactgagacttgagat |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6593855 |
atcactaaagctaacaaatatttaggatcacgtgatctcatacccaaacccatatacaggtaattttaagttcttttttaaaataactgagacttgagat |
6593756 |
T |
|
| Q |
301 |
tttaatttacacctttcttt |
320 |
Q |
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|||||||||||||| ||||| |
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| T |
6593755 |
tttaatttacacctatcttt |
6593736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 99 - 314
Target Start/End: Original strand, 6791638 - 6791852
Alignment:
| Q |
99 |
ggagatatgtttggaggaaacgcttttcgtgattttcttgatagaatatcaatggaggaaacctctaaagaagaagacaagctcatgacctgggtagcag |
198 |
Q |
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| T |
6791638 |
ggaggtatgtttggaggagacacttttcatgattttctcaacagaatatcaatggaggaaatctctaaagaagaggacaagctcatgacctgggtagcag |
6791737 |
T |
|
| Q |
199 |
cgatcactaaagctaacagatatttaggatcacgtgatctcatactcaaacccgtatacaggtaattttaagttcttttttaaaataactgagacttgag |
298 |
Q |
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| T |
6791738 |
cgatcactaaagcaaacaattatttaggttcaagtgatctcatacataaaccaatatataggtaattttaagttc-tttttaaaatagttgagacttgag |
6791836 |
T |
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| Q |
299 |
attttaatttacacct |
314 |
Q |
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|||||||| ||||||| |
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| T |
6791837 |
attttaatatacacct |
6791852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 6830082 - 6830145
Alignment:
| Q |
3 |
caagaattggagaaaataactcagtgttgccaaacctcagatttcgttgttctgcctgtgttct |
66 |
Q |
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| T |
6830082 |
caagaattggagaaaataactgaatgttgtcgaacctcagacttggttgtttttcctgtgttct |
6830145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 6503185 - 6503152
Alignment:
| Q |
3 |
caagaattggagaaaataactcagtgttgccaaa |
36 |
Q |
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| T |
6503185 |
caagaattggagaaaataacccagtgttgccaaa |
6503152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 6506692 - 6506659
Alignment:
| Q |
3 |
caagaattggagaaaataactcagtgttgccaaa |
36 |
Q |
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| T |
6506692 |
caagaattggagaaaataacccagtgttgccaaa |
6506659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0729
Description:
Target: scaffold0729; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 99 - 314
Target Start/End: Complemental strand, 6991 - 6777
Alignment:
| Q |
99 |
ggagatatgtttggaggaaacgcttttcgtgattttcttgatagaatatcaatggaggaaacctctaaagaagaagacaagctcatgacctgggtagcag |
198 |
Q |
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|||| ||||||||||||| || |||||| ||||||||| | ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
6991 |
ggaggtatgtttggaggagacacttttcatgattttctcaacagaatatcaatggaggaaatctctaaagaagaggacaagctcatgacctgggtagcag |
6892 |
T |
|
| Q |
199 |
cgatcactaaagctaacagatatttaggatcacgtgatctcatactcaaacccgtatacaggtaattttaagttcttttttaaaataactgagacttgag |
298 |
Q |
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||||||||||||| |||| |||||||| ||| |||||||||||| ||||| |||| ||||||||||||||||| |||||||||| ||||||||||| |
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| T |
6891 |
cgatcactaaagcaaacaattatttaggttcaagtgatctcatacataaaccaatatataggtaattttaagttct-ttttaaaatagttgagacttgag |
6793 |
T |
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| Q |
299 |
attttaatttacacct |
314 |
Q |
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| T |
6792 |
attttaatatacacct |
6777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 9583 - 9646
Alignment:
| Q |
3 |
caagaattggagaaaataactcagtgttgccaaacctcagatttcgttgttctgcctgtgttct |
66 |
Q |
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||||||||||||||||||||| | ||||| | ||||||||| || |||||| | |||||||||| |
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| T |
9583 |
caagaattggagaaaataactgaatgttgtcgaacctcagacttggttgtttttcctgtgttct |
9646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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