View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_low_15 (Length: 323)
Name: NF14005_low_15
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 31822058 - 31822343
Alignment:
| Q |
1 |
tcacaagtataattctagcctaataaaatgttcctcatgattaatgatgacacactaaggttaaaaaagaatgaaaatacaaaacctgatcagtgttgct |
100 |
Q |
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| T |
31822058 |
tcacaagtataattctagcctaataaaatgttcctcatgattaatgatgacacactaaggttaaaaaagaatgaaaatacaaaacctgatcagtgttgct |
31822157 |
T |
|
| Q |
101 |
attagaccacaattgatggactaattgatgattattt-atgtttgtttgatctataaatcacttttgaaaaaccgaacttcatttcgaatcggtgagatc |
199 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
31822158 |
attagaccacaattgatggactgattgatgattatttcatgtttgtttgatctataaagcccttttgaaaaaccgaacttcatttcgaatcggtgagatc |
31822257 |
T |
|
| Q |
200 |
tcaaggtcatgattcaactactgtaattgaaccacttaaataaccaaaccatagtaatgatcgattcaaagttgaatcaattgaat |
285 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31822258 |
tcaaggtcatgattcaactaccgtaattgaaccacttaaataaccaaaccatagtaatgatcgattcaaagttcaatcaattgaat |
31822343 |
T |
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