View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14005_low_2 (Length: 703)

Name: NF14005_low_2
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14005_low_2
NF14005_low_2
[»] chr3 (11 HSPs)
chr3 (1-339)||(4150117-4150452)
chr3 (1-339)||(4165889-4166221)
chr3 (523-688)||(4150693-4150858)
chr3 (523-688)||(4166462-4166627)
chr3 (411-532)||(4150524-4150645)
chr3 (411-532)||(4166293-4166414)
chr3 (96-190)||(13485324-13485418)
chr3 (233-310)||(13490165-13490242)
chr3 (243-310)||(777419-777486)
chr3 (96-190)||(13490285-13490379)
chr3 (85-121)||(25597540-25597576)
[»] chr7 (1 HSPs)
chr7 (102-203)||(32414267-32414368)
[»] chr1 (1 HSPs)
chr1 (85-189)||(14288277-14288381)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 4150117 - 4150452
Alignment:
Q  1 tgttgaagaacaaaacctgttcatatcaagtgacacacttgtttagttaagattaatctatacatttactacttatcgatgctgcaaaattgagttatct 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||   ||| ||||||||  |||| | | ||| || ||||| |||||||||    
T  4150117 tgttcaagaacaaaacctgttcatatcaagtgacacacttgtttatttaaga---atcaatacatttgttactcaccaatgttggaaaatcgagttatct 4150213  T
Q  101 actccaagtctccgtagctttgattttcagggtaatcctgttcagaaactcagtgggaacaataacaatctctcttctataaaacatgtaaaaattgatg 200  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4150214 actccaagtctccgtagctttgattttaagggtaatcctattcagaaactcagtgggaacaataacaatctctcttctatcaaacatgtaaaaattgatg 4150313  T
Q  201 tagcagtcccgtcatatatcgaaaaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactct 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4150314 tagcagtcccgtcatatatcgaaaaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctattct 4150413  T
Q  301 tgaggtacttcagtgactattggtttaggaaaaacatag 339  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4150414 tgaggtacttcagtgactattggtttaggaaaaacatag 4150452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 4165889 - 4166221
Alignment:
Q  1 tgttgaagaacaaaacctgttcatatcaagtgacacacttgtttagttaagattaatctatacatttactacttatcgatgctgcaaaattgagttatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||| |||||||| ||| | | || |||   ||||| |||||||||    
T  4165889 tgttgaagaacaaaacctgttcatatcaagtgacacacttgtttatttaaga---atcaatacatttgctattcaacgttgc---aaaatcgagttatct 4165982  T
Q  101 actccaagtctccgtagctttgattttcagggtaatcctgttcagaaactcagtgggaacaataacaatctctcttctataaaacatgtaaaaattgatg 200  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4165983 actccaagtctccgtagctttgattttaagggtaatcctattcagaaactcagtgggaacaataacaatctctcttctatcaaacatgtaaaaattgatg 4166082  T
Q  201 tagcagtcccgtcatatatcgaaaaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactct 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4166083 tagcagtcccgtcatatatcgaaaaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctattct 4166182  T
Q  301 tgaggtacttcagtgactattggtttaggaaaaacatag 339  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4166183 tgaggtacttcagtgactattggtttaggaaaaacatag 4166221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 523 - 688
Target Start/End: Original strand, 4150693 - 4150858
Alignment:
Q  523 ttgctgaaaaagtcacccttggcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttaagaacnnnnnnncattctgatttggcct 622  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||       ||||||||||||||||    
T  4150693 ttgctgcaaaagtcacccttagcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttcagaactttttttcattctgatttggcct 4150792  T
Q  623 ttttgttttatttcccttagtctctcttgttatgaaatgtctgtagatacattacaactctctctg 688  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4150793 ttttgttttatttcccttggtctctcttgttatgaaatgtctgtagatacattacaactctctctg 4150858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 523 - 688
Target Start/End: Original strand, 4166462 - 4166627
Alignment:
Q  523 ttgctgaaaaagtcacccttggcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttaagaacnnnnnnncattctgatttggcct 622  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||       ||||||||||||||||    
T  4166462 ttgctgcaaaagtcacccttagcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttcagaactttttttcattctgatttggcct 4166561  T
Q  623 ttttgttttatttcccttagtctctcttgttatgaaatgtctgtagatacattacaactctctctg 688  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4166562 ttttgttttatttcccttggtctctcttgttatgaaatgtctgtagatacattacaactctctctg 4166627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 411 - 532
Target Start/End: Original strand, 4150524 - 4150645
Alignment:
Q  411 aaaacatgacttgctttaaattgatcatgattcaccctccctcattgtatagactctttgcttagttcctggtttatggaaggttgatttcccttactta 510  Q
    |||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4150524 aaaacatgacttgccttaaactgatcatgattcaccctccctcgttgcatagactctttgctcagttcctggtttatggaaggttgatttcccttactta 4150623  T
Q  511 caaaacttgaaattgctgaaaa 532  Q
    ||||||||||||||||||||||    
T  4150624 caaaacttgaaattgctgaaaa 4150645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 411 - 532
Target Start/End: Original strand, 4166293 - 4166414
Alignment:
Q  411 aaaacatgacttgctttaaattgatcatgattcaccctccctcattgtatagactctttgcttagttcctggtttatggaaggttgatttcccttactta 510  Q
    |||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4166293 aaaacatgacttgccttaaactgatcatgattcaccctccctcgttgcatagactctttgctcagttcctggtttatggaaggttgatttcccttactta 4166392  T
Q  511 caaaacttgaaattgctgaaaa 532  Q
    ||||||||||||||||||||||    
T  4166393 caaaacttgaaattgctgaaaa 4166414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 13485418 - 13485324
Alignment:
Q  96 tatctactccaagtctccgtagctttgattttcagggtaatcctgttcagaaactcagtgggaacaataacaatctctcttctataaaacatgta 190  Q
    ||||||||||||||||| | | |||||||||||| |||| |||| |||||||||||  ||||| ||| | ||||||||||||||| |||||||||    
T  13485418 tatctactccaagtctctgcacctttgattttcatggtattcctattcagaaactccatgggatcaagagcaatctctcttctatcaaacatgta 13485324  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 13490242 - 13490165
Alignment:
Q  233 ttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtactt 310  Q
    ||||||||  |||||||||||||||||||| ||  ||| ||||||||||| || |||||| |||||||| ||||||||    
T  13490242 ttggttctgctcaactggctagttgagcttgctaatattgaatcattgactgtgtcttcaactactcttcaggtactt 13490165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 777486 - 777419
Alignment:
Q  243 tcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtactt 310  Q
    |||| ||||||||||||||| ||  |||||||||| ||||||| ||||||  ||||||||||||||||    
T  777486 tcaattggctagttgagcttgctaatatcgaatcactgacagtgtcttcaaatactcttgaggtactt 777419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 13490379 - 13490285
Alignment:
Q  96 tatctactccaagtctccgtagctttgattttcagggtaatcctgttcagaaactcagtgggaacaataacaatctctcttctataaaacatgta 190  Q
    ||||||||||||||||  ||| |||||| ||||| |||| |||| |||||||||||  | ||| ||| |  |||||||||||||| |||||||||    
T  13490379 tatctactccaagtctttgtacctttgagtttcatggtattcctattcagaaactccatcggagcaagagaaatctctcttctattaaacatgta 13490285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 25597540 - 25597576
Alignment:
Q  85 caaaattgagttatctactccaagtctccgtagcttt 121  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  25597540 caaaattgagttatctactccaagtctacgtaacttt 25597576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 32414267 - 32414368
Alignment:
Q  102 ctccaagtctccgtagctttgattttcagggtaatcctgttcagaaactcagtgggaacaataacaatctctcttctataaaacatgtaaaaattgatgt 201  Q
    ||||||||||  ||||||||||||||  ||||| ||||||||||||||||   |||| ||| | ||||||||||||||| |||||||| |||||||| ||    
T  32414267 ctccaagtctttgtagctttgattttaggggtattcctgttcagaaactctacgggagcaagagcaatctctcttctatcaaacatgtgaaaattgacgt 32414366  T
Q  202 ag 203  Q
    ||    
T  32414367 ag 32414368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 14288381 - 14288277
Alignment:
Q  85 caaaattgagttatctactccaagtctccgtagctttgattttcagggtaatcctgttcagaaactcagtgggaacaataacaatctctcttctataaaa 184  Q
    |||| ||||| |||| |||||||||||| ||| |||| |||||  ||||| |||| |||| |||||| ||||||  || | ||||||||||||||| |||    
T  14288381 caaatttgagctatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaatcaatctctcttctatcaaa 14288282  T
Q  185 catgt 189  Q
    |||||    
T  14288281 catgt 14288277  T

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