View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_low_22 (Length: 259)
Name: NF14005_low_22
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 10101732 - 10101563
Alignment:
| Q |
16 |
atgaacaaagaaaaggattaatgccacagacata--attaacttaagtaaatactgcaatgacatttgtgcattattcctcttatgatctatatcttttg |
113 |
Q |
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| T |
10101732 |
atgaacaaagaaaaggattaatgccacagacatataattaacttaagtaaatactgcaatgacatttgtgcattattcctcttatgatctaaatcttttt |
10101633 |
T |
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| Q |
114 |
gaactttcttgtataaaagtgatcatatttggttttgatttaaaatttcataagcttccatgtttgttta |
183 |
Q |
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| T |
10101632 |
gaactttcttgtatacaagtgatcatatttggttttgatttaaaatttcataagcttccatgtttgttta |
10101563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 10103092 - 10102987
Alignment:
| Q |
68 |
tgcaatgacatttgtgcattattcctctt--atgatctatatcttttggaactttcttgtataaaagtgatcatatttggttttgatttaaaatttcata |
165 |
Q |
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| T |
10103092 |
tgcaatgacatttctgcattattcctcttttatgttgtatatcttttggaattttcatttatataagggatcctatttggttttgatttaacatttcaga |
10102993 |
T |
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| Q |
166 |
agcttc |
171 |
Q |
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|||||| |
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| T |
10102992 |
agcttc |
10102987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 10101373 - 10101313
Alignment:
| Q |
182 |
tacatcttaatttgtgtaaaatgatcaatacgtcatagaatttgagacagagggggcaact |
242 |
Q |
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| T |
10101373 |
tacatcttaatttgtgtaaaatgatcaatacgtcatataatttgtggcagaggtggcaact |
10101313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 10089859 - 10089827
Alignment:
| Q |
139 |
tatttggttttgatttaaaatttcataagcttc |
171 |
Q |
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| T |
10089859 |
tatttggttttgatttaaaatttcagaagcttc |
10089827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 42141819 - 42141781
Alignment:
| Q |
186 |
tcttaatttgtgtaaaatgatcaatacgtcatagaattt |
224 |
Q |
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| T |
42141819 |
tcttaatttgtgtaaaatgatcaatacgtcatataattt |
42141781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 2344837 - 2344795
Alignment:
| Q |
186 |
tcttaatttgtgtaaaatgatcaatacgtcatagaatttgaga |
228 |
Q |
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| T |
2344837 |
tcttaatttgtgtaaaatgatcaaaacatcatataatttgaga |
2344795 |
T |
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