View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_low_26 (Length: 241)
Name: NF14005_low_26
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 49008139 - 49008364
Alignment:
| Q |
1 |
aaccagcaccaagtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatctt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49008139 |
aaccagcaccaagtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatctt |
49008238 |
T |
|
| Q |
101 |
agcttcatggcctcaaaatgttccagcaacagagctgcaattccagaacaatctcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49008239 |
agcttcatggcctcaaaatgttccagcaacagagctgcaattccagaacaatctcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtcca |
49008338 |
T |
|
| Q |
201 |
cacgttgcaggtgtagcagcactttt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
49008339 |
cacgttgcaggtgtagcagcactttt |
49008364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 21687241 - 21687136
Alignment:
| Q |
7 |
caccaagtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttc |
106 |
Q |
| |
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|||| ||||||||| |||||||||||| || |||||| |||||||||||| ||| |||||||| |||||||| || || || ||| |||||||||| | |
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| T |
21687241 |
cacctagtgtggatttttatagctcaaggggaccatcaaatagttgtccatatgtgttgaaacctgacatcactgctcctggtacatcaatcttagctgc |
21687142 |
T |
|
| Q |
107 |
atggcc |
112 |
Q |
| |
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|||||| |
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| T |
21687141 |
atggcc |
21687136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 21687100 - 21687028
Alignment:
| Q |
154 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcactttt |
226 |
Q |
| |
|
|||| ||||||||||| ||| || ||||||||| |||||||||||||| ||||||||||||||||| ||||| |
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| T |
21687100 |
tctttaacaacttcaatttgatagatggaacatctatgtcatgtccacatgttgcaggtgtagcagcgctttt |
21687028 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 8962997 - 8963120
Alignment:
| Q |
1 |
aaccagcaccaagtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatctt |
100 |
Q |
| |
|
|||||| ||| || |||||| |||||| || |||||||||||| | |||||||||| ||| |||||||| ||||| ||||| || || || |||||| |
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| T |
8962997 |
aaccagtacctagggtggatttttatagttctagagggccatcaaagagttgtccatatgtgttgaaacctgacattacagctcccggtacgtcaatctt |
8963096 |
T |
|
| Q |
101 |
agcttcatggcctcaaaatgttcc |
124 |
Q |
| |
|
|||| ||||||||| ||||||||| |
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| T |
8963097 |
agctgcatggcctccaaatgttcc |
8963120 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 8974543 - 8974615
Alignment:
| Q |
154 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcactttt |
226 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||| ||||||| ||| || ||||| ||||||| ||||||||| |
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|
| T |
8974543 |
tcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcactttt |
8974615 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 8963150 - 8963219
Alignment:
| Q |
157 |
tcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcactttt |
226 |
Q |
| |
|
||||||| ||||| || |||| ||||||||| ||||||||||| || ||||| ||||||| ||||||||| |
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| T |
8963150 |
tcaacaagttcaattttttaactggaacatctatgtcatgtcctcatgttgccggtgtaggagcactttt |
8963219 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 8958133 - 8958205
Alignment:
| Q |
154 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcactttt |
226 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||| ||| ||||||| || ||||||||||| || |||||||| |
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|
| T |
8958133 |
tcttcaacaagttcaatgtgataagtggaacatctatggcatgtcctcatgttgcaggtgtcgcggcactttt |
8958205 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 8958005 - 8958094
Alignment:
| Q |
23 |
ttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcc |
112 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||||| | | |||||||| |||||||| || || || ||| ||||||||| ||||||| |
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| T |
8958005 |
ttatagttcaagagggccttcaaatagttgtccatatattttgaaacctgacatcactgctcctggtacaaatatcttagctgcatggcc |
8958094 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 34962867 - 34962792
Alignment:
| Q |
1 |
aaccagcaccaagtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacat |
76 |
Q |
| |
|
|||||||||| ||||| ||| ||||| ||||||||||||||| |||||||||||||||| |||||||| ||||| |
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|
| T |
34962867 |
aaccagcacctagtgttgattcatatagttcaagagggccatcatatagttgtccatttgtgttgaaacctgacat |
34962792 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 19375811 - 19375747
Alignment:
| Q |
154 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagca |
218 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||||||| ||| ||||||| |||||||||||| ||||| |
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|
| T |
19375811 |
tcttcaacaagttcaatttgataagtggaacatctatggcatgtcctcacgttgcaggtatagca |
19375747 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 19375961 - 19375850
Alignment:
| Q |
1 |
aaccagcaccaagtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatctt |
100 |
Q |
| |
|
||||| |||| ||||| ||| |||||| ||||||||||| ||| ||| |||||||||||| |||||||| |||||||| || | || ||| |||||| |
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|
| T |
19375961 |
aaccaacacctagtgttgatctttatagttcaagagggccttcaaataattgtccatttgtgttgaaacccgacatcactgctcttggtacatcaatctt |
19375862 |
T |
|
| Q |
101 |
agcttcatggcc |
112 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
19375861 |
agctgcatggcc |
19375850 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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