View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_low_27 (Length: 241)
Name: NF14005_low_27
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37225928 - 37226147
Alignment:
| Q |
1 |
tattgatatagtttgttttgagttgactatctataatttgatagtatagttaagacttaagattgcaccagttagagaaatcattggtctatagtcttgg |
100 |
Q |
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| T |
37225928 |
tattgatatagtttgttttgagttgactatctataatttgatagtatagttaagacttaa--ttgcaccagttagagaaatcattggtctatagtcttgg |
37226025 |
T |
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| Q |
101 |
attcgagatataaaatttatttcaagacaatattttaaagaaaccataggggttttgcaaaaaaggtaaagaatactaggaactggtataaaaaatttga |
200 |
Q |
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| T |
37226026 |
attggagatagaaaatttatttcaagacaatatattaaagaaaccgtaggggttttgcaaaaaaggtaaagaatactaggaaatggtataaaaaatttga |
37226125 |
T |
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| Q |
201 |
tctctttaaaatacctctgcat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
37226126 |
tctctttaaaatacctctgcat |
37226147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 13425227 - 13425006
Alignment:
| Q |
1 |
tattgatatagtttgttttgagttgactatctataatttgatagtatagttaagacttaagattgcaccagttagagaaatcattggtctatagtcttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
13425227 |
tattgatatagtttgttttgagttgactatctataatttgatagtatagttaagacttcagattgcaccagttagagaaatcattggtctatagtcttcg |
13425128 |
T |
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| Q |
101 |
attcgagatataaaatttatttcaagacaatattttaaagaaaccataggggttttgcaaaaaaggtaaagaatactaggaactggtataaaaaatttga |
200 |
Q |
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||| |||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
13425127 |
attggagatagaaaatttatttcaagacactatattaaagaaaccataggggttttgcaaaaaaggtaaataatactaggaaatggtataaaaaatttga |
13425028 |
T |
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| Q |
201 |
tctctttaaaatacctctgcat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
13425027 |
tctctttaaaatacctctgcat |
13425006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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