View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_low_3 (Length: 588)
Name: NF14005_low_3
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 431 - 569
Target Start/End: Original strand, 16578150 - 16578288
Alignment:
| Q |
431 |
tgccaaatttttcccagcaagttgcaagaagaagctgcagtccaatatagaataagtcaattgctttctgtaagaagaaactttgaatttttcttatata |
530 |
Q |
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| T |
16578150 |
tgccaaatttttcccagcaagttgcaagaagaagctgcagtccaatatagaataagtcaattgctttctgtaagaagaaactttgaatttttcttatata |
16578249 |
T |
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| Q |
531 |
aacaataatttcatcatcttattttctttacttcacctg |
569 |
Q |
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| T |
16578250 |
aacaataatttcatcatcttattttctttacttcacctg |
16578288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 16577741 - 16577895
Alignment:
| Q |
23 |
aagagaacacttcctaataatcgtgtgatcaaccatcactactagctagtagtccttttgcatcttatgatgaaaccatctcttttacttaattaataaa |
122 |
Q |
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| T |
16577741 |
aagagaacacttcctaataatcgtgtgatcaaccatcactactagctagtagtccttttgcatcttatgatgaaaccatctcttttacttaattaataaa |
16577840 |
T |
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| Q |
123 |
taattaatcattctcactttaatatcatacacacaaacactcctttacttgattccccc |
181 |
Q |
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| T |
16577841 |
taattaa----tctcactttcatatcatacacacaaacactcctttacttgattccccc |
16577895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 259 - 398
Target Start/End: Original strand, 16577974 - 16578113
Alignment:
| Q |
259 |
aatttatctgtatagctattagctagtgaaagagcatctatgtatttcatataatttgtttttagggaatagatagacacaagaacaaacccttgttttt |
358 |
Q |
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| T |
16577974 |
aatttatctgtataactattagctagtgaaagagcatctatgtatttcatataatttgtttttagggaattgatagacacaagaacaaacccttgttttt |
16578073 |
T |
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| Q |
359 |
cttatatcatgagttgttaaggtttgactttccttatctc |
398 |
Q |
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| T |
16578074 |
ctaatatcatgagttgttaaggtttgactttccttatctc |
16578113 |
T |
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