View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_low_30 (Length: 203)
Name: NF14005_low_30
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 4641590 - 4641762
Alignment:
| Q |
16 |
cacataggacatggtacactctatataacaaaagacaacactacactatatcaatgttataaataaaacagaatttctccaaaatgctggagcaccaatt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4641590 |
cacataggacatggtacactctatataacaaaagacaacactacactat--caatgttataaataaaccagaatttctccaaaatgctggagcaccaatt |
4641687 |
T |
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| Q |
116 |
ttgattgcagccccttgagacagtcgttgaagtttgcagtagtgtttccaatcccctccaatttcccagtataat |
190 |
Q |
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| T |
4641688 |
ttgattgcagccccttgagacagtcgttgaagtttgcagtagtgtttccaatcccctccaatttcccagtgtaat |
4641762 |
T |
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Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 3005314 - 3005152
Alignment:
| Q |
16 |
cacataggacatggtacactctatataacaaaagacaacactacactatatcaatgttataaataaaacagaatttctccaaaatgctggagcaccaatt |
115 |
Q |
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|||||||||| |||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || | |||||||||||||| |
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| T |
3005314 |
cacataggacctggtacactccatataacaaaagaccacactacactat--caatgttataaataaaacagaatttctcccaactactggagcaccaatt |
3005217 |
T |
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| Q |
116 |
ttgattgcagccccttgagacagtcgttgaagtttgcagtagtgtttccaatcccctccaatttc |
180 |
Q |
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| T |
3005216 |
ttgattgcagtccctcgagacagccgtcgaagtgtgcagtagtgtttccaatcccctccaatttc |
3005152 |
T |
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Target: chr7 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 7853132 - 7852970
Alignment:
| Q |
16 |
cacataggacatggtacactctatataacaaaagacaacactacactatatcaatgttataaataaaacagaatttctccaaaatgctggagcaccaatt |
115 |
Q |
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|||||||||| || ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| | || || |||||||||| || |
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| T |
7853132 |
cacataggacttgctacactccatataacaaaagaccacactacactat--caatgttataaataaaacaaaatttcttccaactgatggagcaccagtt |
7853035 |
T |
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| Q |
116 |
ttgattgcagccccttgagacagtcgttgaagtttgcagtagtgtttccaatcccctccaatttc |
180 |
Q |
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|||||||||| |||| ||| ||| ||| ||||||||||||||||||||||| || ||||||||| |
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| T |
7853034 |
ttgattgcagtccctcgagtcagccgtcgaagtttgcagtagtgtttccaaccctttccaatttc |
7852970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 5562942 - 5563104
Alignment:
| Q |
16 |
cacataggacatggtacactctatataacaaaagacaacactacactatatcaatgttataaataaaacagaatttctccaaaatgctggagcaccaatt |
115 |
Q |
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|
|||||||||| || ||||||| |||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||| | || | |||||||| | || |
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| T |
5562942 |
cacataggacctgctacactccatattacaaaagaccacactacactat--caatgttataaataaaacaaaatttcttccaactattggagcactagtt |
5563039 |
T |
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| Q |
116 |
ttgattgcagccccttgagacagtcgttgaagtttgcagtagtgtttccaatcccctccaatttc |
180 |
Q |
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|||| ||||| |||| |||| || ||| ||||| ||||||||||||||||| || ||||||||| |
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| T |
5563040 |
ttgaatgcagtccctcgagatagccgtcgaagtgtgcagtagtgtttccaaccctttccaatttc |
5563104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 180
Target Start/End: Complemental strand, 54655179 - 54655151
Alignment:
| Q |
152 |
cagtagtgtttccaatcccctccaatttc |
180 |
Q |
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| T |
54655179 |
cagtagtgtttccaatcccctccaatttc |
54655151 |
T |
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