View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14005_low_8 (Length: 531)
Name: NF14005_low_8
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 16 - 521
Target Start/End: Original strand, 39846510 - 39847015
Alignment:
| Q |
16 |
aacatccactcaattttgttgagaaagttaacaacaacatgaacttgttttaattcgcgagaatagaacatgtcagcattagcttcgattttatccttga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39846510 |
aacatccactcaattttgttgagaaagttaacaacaacatgaacttgttttaattcgcgagaatataacatgtcagcattagcttcgattttatccttga |
39846609 |
T |
|
| Q |
116 |
ctacattgaagtttacttcacgagcaagacctagtttaaattttacatccaagtcttttttaaaggcgatatccctcaattcctgaagaagttgatcagg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39846610 |
ctacattgaagtttacttcacgagcaagacctagtttaaattttacaaccaagtcttttttaaaggcgatatccctcaattcctgaagaagttgatcagg |
39846709 |
T |
|
| Q |
216 |
gaggtcaagttgcagatatcttaagtcaataatggaaagcccttctgatataactttatcgattgcaccaataacatccacatctaccatatcatcaaga |
315 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39846710 |
gaggtcaagttgcagatatctaaagtcaataatggaaagcccttctgatataactttgtcgattgcaccaataacatccacatctaccatatcatcaaga |
39846809 |
T |
|
| Q |
316 |
tctaacaactcatcctcgtctatcatatcattaatttcttcgtctatcatatcattcatgtcttcatctgtaatgttttcgttttgttcttccaatgatg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39846810 |
tctaacaactcatcctcgtctatcatatcattaatttcttcgtctatcatatcattcatttcttcatctgtaatgttttcgttttgttcttccaatgatg |
39846909 |
T |
|
| Q |
416 |
cttcatcttcggattctatatctgagggacaaaaaggaacctaaacaaggaaacaacattgagttcaagataagcctagaaacaggataagaataaatgg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39846910 |
cttcatcttcggattctatatctgagggacaaaaaggaacctaaacaaggaaacaacattcagttcaagataagcctagaaacaggataagaataaatgg |
39847009 |
T |
|
| Q |
516 |
gtagct |
521 |
Q |
| |
|
|||||| |
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|
| T |
39847010 |
gtagct |
39847015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 39863443 - 39863630
Alignment:
| Q |
32 |
tgttgagaaagttaacaacaacatgaacttgttttaattcgcgagaatagaacatgtcagcattagcttcgattttatccttgactacattgaagtttac |
131 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| ||||| ||||| ||| |||||||||||| || ||||| ||||||||| ||||||||| || |
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|
| T |
39863443 |
tgttgagaaggttaacaacaacaccaacttgttctaattgacgagacgtgaaagcgtcagcattagcatcaattttttccttgactgtattgaagttaac |
39863542 |
T |
|
| Q |
132 |
ttcacgagcaagacctagtttaaattttacatccaagtcttttttaaaggcgatatccctcaattcctgaagaagttgatcagggagg |
219 |
Q |
| |
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|| | ||| | |||| ||| |||||| || ||||||||| ||||||||| |||||||||||||||||||||||||| | ||||||| |
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|
| T |
39863543 |
tttaggagagataccttcttttaatttttcaaccaagtcttctttaaaggcaatatccctcaattcctgaagaagttgcttagggagg |
39863630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 403 - 521
Target Start/End: Original strand, 39856702 - 39856822
Alignment:
| Q |
403 |
tcttccaatgatgcttcatcttcggattctatatctgagggacaaaaagga---acctaaacaaggaaacaacattgagttcaagataagcctagaaaca |
499 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| ||||||| | ||||||| |||| ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
39856702 |
tcttccaatgattcttcatctttggattctatgtctgaggatcgaaaaggagaaacctgaacaaggaaacaacattc-gttcaagataagcctagaaaca |
39856800 |
T |
|
| Q |
500 |
ggataagaataaatgggtagct |
521 |
Q |
| |
|
||| ||||||| ||||||||| |
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|
| T |
39856801 |
tgattagaataactgggtagct |
39856822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 403 - 521
Target Start/End: Complemental strand, 38980274 - 38980156
Alignment:
| Q |
403 |
tcttccaatgatgcttcatcttcggattctatatctgagggacaaaaaggaacctaaacaaggaaacaacattgagttcaagataagcctagaaacagga |
502 |
Q |
| |
|
|||||| |||| |||||||||| ||||||| ||| | ||||||||||||||| |||||||||| |||||| || |||||||| ||||||||||| || |
|
|
| T |
38980274 |
tcttccgatgaatcttcatcttcaaattctatgcctgggtgacaaaaaggaacctgaacaaggaaaaaacattcagatcaagatacgcctagaaacatga |
38980175 |
T |
|
| Q |
503 |
taagaataaatgggtagct |
521 |
Q |
| |
|
||||||| ||||||||||| |
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|
| T |
38980174 |
taagaatcaatgggtagct |
38980156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 403 - 521
Target Start/End: Original strand, 39910211 - 39910329
Alignment:
| Q |
403 |
tcttccaatgatgcttcatcttcggattctatatctgagggacaaaaaggaacctaaacaaggaaacaacattgagttcaagataagcctagaaacagga |
502 |
Q |
| |
|
|||||| |||| |||||||||| ||||||| ||| | ||||||||||||||| |||||||||| |||||| || |||||||| ||||||||||| || |
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|
| T |
39910211 |
tcttccgatgaatcttcatcttcaaattctatgcctgggtgacaaaaaggaacctgaacaaggaaaaaacattcagatcaagatacgcctagaaacatga |
39910310 |
T |
|
| Q |
503 |
taagaataaatgggtagct |
521 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
39910311 |
taagaatcaatgggtagct |
39910329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 39856228 - 39856421
Alignment:
| Q |
16 |
aacatccactcaattttgttgagaaagttaacaacaacatgaacttgttttaattcgcgagaatagaacatgtcagcattagcttcgattttatccttga |
115 |
Q |
| |
|
||||||| | |||| || |||| || ||||||||||||| ||||||| || || | ||||| ||||||||||| |||||||||| ||||| ||| ||| |
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|
| T |
39856228 |
aacatcctcgcaatgttcttgacaaggttaacaacaacaccgacttgttctagttggtgagaagagaacatgtcaacattagcttcaattttttccatga |
39856327 |
T |
|
| Q |
116 |
ctacattgaagtttacttcacgagcaagacctagtttaaattttacatccaagtcttttttaaaggcgatatccctcaattcctgaagaagttg |
209 |
Q |
| |
|
|| ||||| | |||| | ||| |||||| ||||||||||| || ||||||||| |||||| |||||||||||||||||| ||||||||| |
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|
| T |
39856328 |
ctgtgttgaaactaactttaggagtgagaccttgtttaaatttttcaaccaagtcttctttaaaagcgatatccctcaattccataagaagttg |
39856421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 386 - 521
Target Start/End: Original strand, 39897432 - 39897566
Alignment:
| Q |
386 |
taatgttttcgttttgttcttccaatgatgcttcatcttcggattctatatctgagggacaaaaaggaacctaaacaaggaaacaacattgagttcaaga |
485 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||||||||| ||||||| | | ||| ||| | |||||||||| ||||||||| ||| || ||||||| |
|
|
| T |
39897432 |
taatgttttcgttttgctcttcaaatgattcttcatctttggattctgtgtttgatggaaacaaaggaacctgaacaaggaatcaa-gttctattcaaga |
39897530 |
T |
|
| Q |
486 |
taagcctagaaacaggataagaataaatgggtagct |
521 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| |
|
|
| T |
39897531 |
taagcctaaaataaggataagaataaatgggtagct |
39897566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 389 - 518
Target Start/End: Original strand, 39864052 - 39864181
Alignment:
| Q |
389 |
tgttttcgttttgttcttccaatgatgcttcatcttcggattctatatctgagggacaaaaaggaacctaaacaaggaaacaacattgagttcaagataa |
488 |
Q |
| |
|
|||||| |||||| || ||||||||| ||||||||| || |||| | | || ||| ||||||||| || |||| ||||| | | || |||||||| ||| |
|
|
| T |
39864052 |
tgtttttgttttgctcctccaatgattcttcatctttggtttcttcagccgatggagaaaaaggaaactgaacagggaaaaatctttcagttcaagttaa |
39864151 |
T |
|
| Q |
489 |
gcctagaaacaggataagaataaatgggta |
518 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
39864152 |
gcctagaaaaaggataagaataaatgggta |
39864181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 39737796 - 39737666
Alignment:
| Q |
88 |
tcagcattagcttcgattttatccttgactacattgaagtttacttcacgagcaagacctagtttaaattttacatccaagtcttttttaaaggcgatat |
187 |
Q |
| |
|
||||||||||| || ||||| ||||||||| | ||||| || |||| | || |||||| ||||| |||| || |||||||| |||||| || |||| |
|
|
| T |
39737796 |
tcagcattagcgtcaattttttccttgactgcgttgaaattaactttagaagtgagaccttctttaagtttttcaaccaagtctcctttaaaagcaatat |
39737697 |
T |
|
| Q |
188 |
ccctcaattcctgaagaagttgatcagggag |
218 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |
|
|
| T |
39737696 |
cccttaattcctgaagaagttgctcagggag |
39737666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 32826844 - 32826903
Alignment:
| Q |
150 |
tttaaattttacatccaagtcttttttaaaggcgatatccctcaattcctgaagaagttg |
209 |
Q |
| |
|
|||||||||| || ||||||| | ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32826844 |
tttaaatttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttg |
32826903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 53495494 - 53495292
Alignment:
| Q |
16 |
aacatccactcaattttgttgagaaagttaacaacaacatgaacttgttttaattcgcgagaatagaacatgtcagcattagcttcgattttatccttga |
115 |
Q |
| |
|
||||||| | |||| |||||||||| ||||||||||||| || ||||| ||||| |||| ||||| ||||||||||| || ||||| |||||| |
|
|
| T |
53495494 |
aacatcctcacaatgttgttgagaaggttaacaacaacaccaatttgttctaattgctgagaggagaacgcatcagcattagcgtcaatttttaccttga |
53495395 |
T |
|
| Q |
116 |
ctacattgaagtttacttcacgagcaagacctagtttaaatttta-catccaagtcttttttaaaggcgatatccctcaattcctgaagaagttgatcag |
214 |
Q |
| |
|
| |||||||||| |||| ||| |||||| ||||| |||| || |||||||||| ||||| ||||||||||||||||||||||||||| | || |
|
|
| T |
53495394 |
ttgcattgaagttaacttttggagtgagaccttctttaatttttttcaaccaagtcttt---aaaggtgatatccctcaattcctgaagaagttgcttag |
53495298 |
T |
|
| Q |
215 |
ggaggt |
220 |
Q |
| |
|
|||||| |
|
|
| T |
53495297 |
ggaggt |
53495292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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