View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14005_low_9 (Length: 498)
Name: NF14005_low_9
Description: NF14005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14005_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 27540033 - 27539558
Alignment:
| Q |
1 |
gacaattataaagaacaaggaatataactttctgctccaatacaaatagtatcagttgcaaccaaacacacttgcaagcttcacctaaaggtaattaaag |
100 |
Q |
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| T |
27540033 |
gacaattataaaaaacaaggaatataactttctgctccaatacaaatagtacgagttgcaaccaaacacacttgcaagcttcacctaaaggtaattaaag |
27539934 |
T |
|
| Q |
101 |
aatattctagcaatcaattctcnnnnnnncttcatcaaacattagtgtcaatgacattgggaaaatgatgactttatttttatatttggacaataatcat |
200 |
Q |
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| T |
27539933 |
actattctagcaatcaattctctttttttcttcatcaaacattagtgtcaatgacattgggaaaatgatgactttatttttacatttggacaataagcat |
27539834 |
T |
|
| Q |
201 |
atgactgttgaatactttacagtattgttcaccttggataattgtggcagatggcgacattctccatgtttgggcaataaactgacataaagattacaaa |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27539833 |
ttgactgttgaatactttacaatattgttcaccttggataattgtggcagatggcgacattctccatgtttgggcaataaactgacataaagattacaaa |
27539734 |
T |
|
| Q |
301 |
tgacattatctatgcttgatataattataaaacacttataatgtgaaggtatgtatcgtagagatcatattggttgtgaagcaaaagtaggtatagcaag |
400 |
Q |
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| T |
27539733 |
tgacattatctatgcttgatataattataaaacacttatgatgtgaaggtatgtatcgtagagatcatattggttgtgaagcaaaagtaggtatagcaag |
27539634 |
T |
|
| Q |
401 |
agcacagtgaatgctaaccacatgtagtgaataattcaatacagaacatgtagattggtctgacaacgtttgtgta |
476 |
Q |
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| T |
27539633 |
agcatagtgaatgctaaccacatgtagtgaataattcattacagaacatgtagattggtctgacaacgtttgtgta |
27539558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 8e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 54 - 430
Target Start/End: Original strand, 36606077 - 36606448
Alignment:
| Q |
54 |
agttgcaaccaaacacacttgcaagcttcacctaaaggtaattaaagaatattctagcaatcaattctcnnnnnnncttcatcaaacattagtgtcaatg |
153 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||| |||| | || ||||||||| || |||||| ||||| ||||||| || |
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| T |
36606077 |
agttgcaaccaaacacacttacaagcttcacctaaaagtaattaaataataat-tatcaatcaattatctttttctcttcataaaacaatagtgtcggtg |
36606175 |
T |
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| Q |
154 |
acattgggaaaatgatgactttatttttatatttggacaataatcatatgactgttgaatactttacagtattgttcaccttggataattgtggcagatg |
253 |
Q |
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| T |
36606176 |
acattggaaaaatgatgactttatttttacaattggacaataagcttatgattgttgaagtcttgacagtggtgttcaccttggataattgtggcagatg |
36606275 |
T |
|
| Q |
254 |
gcgacattctccatgtttgggcaataaactgacataaagattacaaatgacattatctatgcttgatataattataaaacacttataatgtgaaggtatg |
353 |
Q |
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| T |
36606276 |
gcgacattctccaagcttgggcaataaacggacataaagattacaaatgacattctccatgcttga------tataaaacacttataatgtgaaggtatg |
36606369 |
T |
|
| Q |
354 |
tatcgtagagatcatattggttgtgaagcaaaagtagg--tatagcaagagcacagtgaatgctaaccacatgtagtga |
430 |
Q |
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||| ||| ||||||| |||| ||||||||||||||| |||| || ||||| | |||||||||||||||||||||| |
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| T |
36606370 |
tattgtatagatcattttggccatgaagcaaaagtaggtatataacaggagcatggagaatgctaaccacatgtagtga |
36606448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 44738827 - 44738761
Alignment:
| Q |
130 |
cttcatcaaacattagtgtcaatgacattgggaaaatgatgactttatttttatatttggacaataa |
196 |
Q |
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||||||||||||||| || || ||||||||||||||| |||||| |||||| ||| ||||||||| |
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| T |
44738827 |
cttcatcaaacattaatgacagggacattgggaaaatggcgactttctttttagattgggacaataa |
44738761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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