View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14006_high_1 (Length: 766)
Name: NF14006_high_1
Description: NF14006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14006_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 278 - 545
Target Start/End: Complemental strand, 10240423 - 10240149
Alignment:
| Q |
278 |
ttgttcaaagtat--tttataatattagagttttggttttgtgacattattacattttgagtcttctttcttcggggttcattttaattttcgtttctat |
375 |
Q |
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| T |
10240423 |
ttgttcaaagtatattttataataatagagttttgattttgtgacattattacattttgagtcttctttcttcggggttcaattttattttcgtttctat |
10240324 |
T |
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| Q |
376 |
cggttgataagtt----attacaattaaaggaagtttttgaactctctcatgtttgttttggtcctgtttctcccaaagtggtaatgttgtatcagtttt |
471 |
Q |
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| T |
10240323 |
cggttgataagtttttaattacaattaaaggatgtttttgaactctctcatgtttgttttggtcctgtttctcccaaagtggtaatgttgtatcagtttt |
10240224 |
T |
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| Q |
472 |
caa-aattaattttctattgatgcttattaattgttcactcaattaattttgttttgtttctctactaagtacta |
545 |
Q |
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| T |
10240223 |
caattattaattttcttttgatgcttattaattgttcactcaattaattttgttttgtttctctactaagtacta |
10240149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 10240573 - 10240455
Alignment:
| Q |
156 |
aaatctaaaataaacaggccctttatctttttactatgatgctttgtatacatgattcaatcaagaaacccattaaagtgggtgatctgatcaagtttta |
255 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || |
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| T |
10240573 |
aaatctaaaataaacgggccctttatttttttactatgatgctttgtatacatgattcaatcaagaaaccttgtaaagtgggtgatctgatcgagttata |
10240474 |
T |
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| Q |
256 |
aaattccaatagtttacac |
274 |
Q |
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| T |
10240473 |
aaattccaatagtttacac |
10240455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 647
Target Start/End: Complemental strand, 10283918 - 10283838
Alignment:
| Q |
568 |
gaaattatatggacttcttctgcaaacgattttatacacaa-caaattaacttctaattataagagtttcattttatattt |
647 |
Q |
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|||||| ||||| | |||||| ||||| ||||||| || || |||||||||||||||||||| ||||||| ||| |||||| |
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| T |
10283918 |
gaaattgtatgggcgtcttctacaaactattttatgcaaaaacaaattaacttctaattataggagtttcgtttgatattt |
10283838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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