View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14006_high_12 (Length: 298)
Name: NF14006_high_12
Description: NF14006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14006_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 21 - 289
Target Start/End: Complemental strand, 52719656 - 52719388
Alignment:
| Q |
21 |
ttccaaatatacccagaataaaattaaaaaattctcaaacccataaattaaccacaagtaatttgaaattgttgagtgctcatcctctcctctttgactc |
120 |
Q |
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| T |
52719656 |
ttccaaatatacccagaataaaattaaaaaattctcaaacccataaattaaccacaagtaatttgaaattgttgagtgctcatcctctcctctttgactc |
52719557 |
T |
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| Q |
121 |
tcgttctcttcttcctcctccacccataaatccccaaattattgccaatatctcttctcaacataacagcacaaacccaatcattaacaatctcttctac |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52719556 |
tcgttctcttcttcctcctccacccataaatccccaaattattgccaatatctcttctcaacttaacagcacaaacccaatcattaacaatctcttctac |
52719457 |
T |
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| Q |
221 |
ctcatttttgtttgctttatcaatttatcttcttgttttcaaagcttccaagctaaactatattcatct |
289 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52719456 |
ctcatttttgtttgcttgatcaatttatcttcttgttttcaaagcttccaagctaaactatattcatct |
52719388 |
T |
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