View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14006_high_23 (Length: 238)
Name: NF14006_high_23
Description: NF14006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14006_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11880653 - 11880433
Alignment:
| Q |
1 |
tttcttgttatgagactttgcaggataattccaatcataacatctgaagctgtagactttaccgaccaccctcacaataagtgagtggtggtagggatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11880653 |
tttcttgttatgagactttgcaggataattccaatcataacatctgaagctgtagactttaccgactaccctcacaataagtgagtggtggtagggatat |
11880554 |
T |
|
| Q |
101 |
gggcgaggatacacaacaggtggaggaggagaattgtaatagtatggtggtggaaggacctttggtggtggtggggacttgtagtagtaaggtgtgtggg |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11880553 |
gggtgaggatacacaacaggtggaggaggagaattgtaatagtatggtggtggaaggacctttggtggtggtggggacttgtagtagtaaggtgtgtggg |
11880454 |
T |
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| Q |
201 |
gaataggagacggagggggag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
11880453 |
gaataggagacggagggggag |
11880433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11903153 - 11902933
Alignment:
| Q |
1 |
tttcttgttatgagactttgcaggataattccaatcataacatctgaagctgtagactttaccgaccaccctcacaataagtgagtggtggtagggatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11903153 |
tttcttgttatgagactttgcaggataattccaatcataacatctgaagctgtagactttaccgactaccctcacaataagtgagtggtggtagggatat |
11903054 |
T |
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| Q |
101 |
gggcgaggatacacaacaggtggaggaggagaattgtaatagtatggtggtggaaggacctttggtggtggtggggacttgtagtagtaaggtgtgtggg |
200 |
Q |
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| T |
11903053 |
gggtgaggatacacaacaggtggaggaggagaattgtaatagtatggtggtggaaggacctttggtggtggtggggacttgtagtagtaaggtgtgtggg |
11902954 |
T |
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| Q |
201 |
gaataggagacggagggggag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
11902953 |
gaataggagacggagggggag |
11902933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11890109 - 11889889
Alignment:
| Q |
1 |
tttcttgttatgagactttgcaggataattccaatcataacatctgaagctgtagactttaccgaccaccctcacaataagtgagtggtggtagggatat |
100 |
Q |
| |
|
||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||| ||||| || ||| |||| || | || ||||||||||||| |
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| T |
11890109 |
tttcttgttatgagacttttcaggatactcccagtcataacatctgaagctgtagacgttacccactaccttcacgatcaatgcatggtggtagggatga |
11890010 |
T |
|
| Q |
101 |
gggcgaggatacacaacaggtggaggaggagaattgtaatagtatggtggtggaaggacctttggtggtggtggggacttgtagtagtaaggtgtgtggg |
200 |
Q |
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||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
11890009 |
gggtgatgatacacaacaggtggaggaggagagttgtaatagtatggtggtggaagaaccttaggtggtggtggggacttgtagtagtaaggtgtatggg |
11889910 |
T |
|
| Q |
201 |
gaataggagacggagggggag |
221 |
Q |
| |
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||||||| || ||||| |||| |
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| T |
11889909 |
gaataggtgatggaggaggag |
11889889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 52820680 - 52820868
Alignment:
| Q |
1 |
tttcttgttatgagactttgcaggataattccaatcataacatctgaagctgtagactttaccgaccaccctcacaataagtgagtggtggtagggatat |
100 |
Q |
| |
|
|||||||| |||||||||| ||||||| | ||||| ||| || || |||||||||||||||| || ||| ||||||| | || ||||||||| ||| |
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| T |
52820680 |
tttcttgtcatgagacttttcaggatactcccaattatagcacttgtagctgtagactttacccactaccttcacaatcaatgggtggtggtaagga--- |
52820776 |
T |
|
| Q |
101 |
gggcgaggatacacaacaggtggaggaggagaattgtaatagtatggtggtggaaggacctttggtggtggtggggacttgtagtagtaaggtgt |
195 |
Q |
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||| ||||| ||||| || |||||||||||||| || |||||||| |||||| | ||| ||||||||||| |||| |||||||| ||||| |
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| T |
52820777 |
ggg---ggatatacaactggcggaggaggagaattatagtagtatggaggtggagtgtacttgggtggtggtggagactgatagtagtacggtgt |
52820868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 11902747 - 11902645
Alignment:
| Q |
122 |
ggaggaggagaattgtaatagtatggtggtggaag-gaccttt--ggtggtggtggggacttgtagtagtaaggtgtgtggggaataggagacggagggg |
218 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | || | |||||||| || || ||||| ||||||||||| |||||||||||||| ||||| | |
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| T |
11902747 |
ggaggaggagatttgtaatagtatggtggtggaggagatggtgaaggtggtgggggagatttgtaatagtaaggtgtatggggaataggagatggaggag |
11902648 |
T |
|
| Q |
219 |
gag |
221 |
Q |
| |
|
||| |
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|
| T |
11902647 |
gag |
11902645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 194
Target Start/End: Original strand, 52821419 - 52821449
Alignment:
| Q |
164 |
ggtggtggtggggacttgtagtagtaaggtg |
194 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
52821419 |
ggtggtggtggggacttgtagtagtaaggtg |
52821449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 11880202 - 11880145
Alignment:
| Q |
164 |
ggtggtggtggggacttgtagtagtaaggtgtgtggggaataggagacggagggggag |
221 |
Q |
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|||||||| || || ||||| ||||||||||| |||||||||||||| ||||| |||| |
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| T |
11880202 |
ggtggtgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggag |
11880145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 11902651 - 11902619
Alignment:
| Q |
122 |
ggaggaggagaattgtaatagtatggtggtgga |
154 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
11902651 |
ggaggaggagatttgtaatagtatggtggtgga |
11902619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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