View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14006_high_3 (Length: 555)
Name: NF14006_high_3
Description: NF14006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14006_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 142 - 545
Target Start/End: Original strand, 32226809 - 32227211
Alignment:
| Q |
142 |
ttgagaaacaatgattttcttacatgggtcgggttattaaaaagataggtagagagaacaaaatcatgagagttaggttttggtgaaaaacatgaggaaa |
241 |
Q |
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| T |
32226809 |
ttgagaaacaatgattttcttacatgggtcgggttattaaaa-gataggtagagagaacaaaatcatgagagttaggttttggtgaaaaacatgaggaaa |
32226907 |
T |
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| Q |
242 |
tggaggttatagatgtgtagtgtttgtgaagagtcctaagaaacggacaggtagaggcttgttttaatgatgttgtcttgtgttagtgaatggaaggaat |
341 |
Q |
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| T |
32226908 |
tggaggttatagatgtgtagtgtttgtgaagagtcctaagaaacggacaggtagaggcttgttttaatgatgttgtcttgtgttagtgaatggaaggaat |
32227007 |
T |
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| Q |
342 |
gattcatcaagaacggggttacctaatccacgttactgttaataattatacatatatattcacaaacaatcacaatattaaaatctgcatttagataatt |
441 |
Q |
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| T |
32227008 |
gattcatcaagaacggggttacctaatccacgttactgttaataattgtacatatatattcacaaacaatcacaatattaaaatctgcatttagataatt |
32227107 |
T |
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| Q |
442 |
taatgtgtatgttaagctcaaaatcacaaggtgtgattaaaactacttaaggaacctacaatacaagtctcatttgtaactataaaaattactagttaga |
541 |
Q |
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| T |
32227108 |
taatgtgtatgttaagctcaaaatcacaaggtgtgattaaaactacttaagtaacctacaatacaagtctcatttgtaactataaaaattgctagttaga |
32227207 |
T |
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| Q |
542 |
ataa |
545 |
Q |
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|||| |
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| T |
32227208 |
ataa |
32227211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 32226687 - 32226721
Alignment:
| Q |
17 |
agagataacaataagctcatatttggtggtggtga |
51 |
Q |
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| T |
32226687 |
agagataacaataagctcatatttggtggtggtga |
32226721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 8449230 - 8449174
Alignment:
| Q |
278 |
taagaaacggacaggtagaggcttgttttaatgatgttgtcttgtgttagtgaatgg |
334 |
Q |
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||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||||| |
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| T |
8449230 |
taagaaacggacatgtatagggttgtgctaatgatgttgtcttgtgttagtgaatgg |
8449174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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