View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14006_high_4 (Length: 545)
Name: NF14006_high_4
Description: NF14006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14006_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 7e-75; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 23 - 258
Target Start/End: Complemental strand, 23461489 - 23461255
Alignment:
| Q |
23 |
cggtgtaatgcaataactttgtgctgaaacaacatattggacaggtcnnnnnnngaggcacttgctaagagggtcacaagaataatgcaagtcagaaatg |
122 |
Q |
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| T |
23461489 |
cggtgtattgcaataactttatgctgaaacaacatattgggcaggtctttttttgaggcacttgctaagagggtcaaaagaataatacaagtcggaaata |
23461390 |
T |
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| Q |
123 |
ttgtgatctctatctcctatttctcaagtacaataagcacaaacatcatcacattcattcagcaagattcggtgatgcagtagactggtattaaattcat |
222 |
Q |
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| T |
23461389 |
ttgtaatctctttctcctgtttctcaaatacaataagcacaa-catcatcgcattcattcagaaagattcggtgatgcagtagactggtattaaattcat |
23461291 |
T |
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| Q |
223 |
catttaaatgactaagtgcaatgatatgttttgcta |
258 |
Q |
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| T |
23461290 |
catttaaatgcctaagtgcaatgatacgttgtgcta |
23461255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 23433612 - 23433433
Alignment:
| Q |
31 |
tgcaataactttgtgctgaaacaacatattggacaggtcnnnnnnngaggcacttgctaagagggtcacaagaataatgcaagtcagaaatgttgtgatc |
130 |
Q |
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| T |
23433612 |
tgcaataactttgtgctgaaacaacatattggacaggtctttttttgaggaacttgttaagagggtcacaagaataatacaagtcagaaatgttgtgatc |
23433513 |
T |
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| Q |
131 |
tctatctcctatttctcaagtacaataagcacaaacatcatcacattcattcagcaagattcggtgatgcagtagactggt |
211 |
Q |
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| T |
23433512 |
tctttcttttgtttctcaagtacaataagcac-aacatcatcacattcactcaataagattcagtgatgcagtggactggt |
23433433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 261 - 445
Target Start/End: Complemental strand, 23460932 - 23460762
Alignment:
| Q |
261 |
tatacctttgtagaagtattcctaattt-attcagcatttctgtgctgtgattgctggtattaatcaatatgatcctgtttttattgttggtacgtttgt |
359 |
Q |
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| T |
23460932 |
tatacctttgcagaagtattcctaattttattcagcagttctgtgctgtgattgctggtattaatcaatctgatcctgtttttattgttggt-------- |
23460841 |
T |
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| Q |
360 |
acaccaaataaataatcagctataaccaggtttgcagcgtttcataattttgtgtatagatccctattcattttcctcagcagtgt |
445 |
Q |
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| T |
23460840 |
-------ataagtagtcagctataaccaggtttgcagcgtttcataattttgtgtaaagatccccattcattttccttagcagtgt |
23460762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 440 - 533
Target Start/End: Complemental strand, 23460171 - 23460078
Alignment:
| Q |
440 |
cagtgtcattgttcttgatcattgaaggtagcaatttcgcttttttctaacaccttctgcttcgtcactaaatgaattgtcggtcttcctcctc |
533 |
Q |
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| T |
23460171 |
cagtgtcaatgttcttgatcattgaagatagcaatgctgctttcttctaacatcttctgcttcgtcattaaatgaattgtcggtcttcttcctc |
23460078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 23476715 - 23476652
Alignment:
| Q |
77 |
gaggcacttgctaagagggtcacaagaataatgcaagtcagaaatgttgtgatctctatctcct |
140 |
Q |
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| T |
23476715 |
gaggcacttgctaagagggtcaaaagaataatacaagtcagaaatgttgtgatctctttctcct |
23476652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 23350198 - 23350101
Alignment:
| Q |
26 |
tgtaatgcaataactttgtgctgaaacaacat-attggacaggtcnnnnnnngaggcacttgctaagagggtcacaagaataatgcaagtcagaaatg |
122 |
Q |
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|||| |||||| |||||||||||||||||||| |||||||||||| |||||||||| |||||||||| |||||||||| ||||||||||||| |
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| T |
23350198 |
tgtattgcaattactttgtgctgaaacaacattattggacaggtctttttttgaggcacttgttaagagggtcgcaagaataatacaagtcagaaatg |
23350101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 23400413 - 23400322
Alignment:
| Q |
23 |
cggtgtaatgcaataactttgtgctgaaacaacatattggacaggtcnnnnnnngaggcacttgctaagagggtcacaagaataatgcaagt |
114 |
Q |
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| T |
23400413 |
cggtgtattgtaataactttgtgctcaaaaaacatattgggcaggtcttttgttgaggcacttgctaagagggtcacaagaataatacaagt |
23400322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 450
Target Start/End: Complemental strand, 23497275 - 23497224
Alignment:
| Q |
399 |
tttcataattttgtgtatagatccctattcattttcctcagcagtgtcattg |
450 |
Q |
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| T |
23497275 |
tttcataattttgtgtatagatctctatttattttcctcagcaatgtcattg |
23497224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 211
Target Start/End: Complemental strand, 23452298 - 23452163
Alignment:
| Q |
77 |
gaggcacttgctaagagggtcacaagaataatgcaagtcagaaatg--ttgtgatctctatctcctatttctcaagtacaataagcacaaacatcatcac |
174 |
Q |
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| T |
23452298 |
gaggcacttgttaaaacgatcaaaagaataatagaagtcagaaatgttttttggtctctttctcctgtttcccaagtaaaatgagcac-aacatcattac |
23452200 |
T |
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| Q |
175 |
attcattcagcaagattcggtgatgcagtagactggt |
211 |
Q |
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| T |
23452199 |
attcactcaacagtatgtgttgatgcagtagactggt |
23452163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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