View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14006_high_6 (Length: 438)
Name: NF14006_high_6
Description: NF14006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14006_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 434
Target Start/End: Original strand, 34466993 - 34467408
Alignment:
| Q |
19 |
agaatttactaaacaatttcaggacttcctgatcattgatccaatgattatgcaaatgagtcacttgacccaaatactcttcgtcaggggaatgagtcga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34466993 |
agaatttactaaacaatttcaggacttcctgatcattgatccaatgattatgcaaatgagtcacttgacccaaatactcttcgtcaggggaatgagtcga |
34467092 |
T |
|
| Q |
119 |
caatgtgtcctgaacagccattactttggtagcttgaagttgagtaggcaatgatgataggnnnnnnngctgaggatttttaataaacttctcaaaatca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
34467093 |
caatgtgtcctgaacagccattactttggtagcttgaagttgagtaggcaatgatgataggaaaaaaagctgaggatttttaataaacttctcataatca |
34467192 |
T |
|
| Q |
219 |
gaatcattttcttgagggataagttttctcatgagggtaggacggttaggcacatatcctccaaaagggtattgaccaaaatttatagcagcatgttgtc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34467193 |
gaatcattttcttgagggataagttttctcatgagggtaggacggttaggcacatatcctccaaaagggtattgaccaaaatttatagcagcatgttgtc |
34467292 |
T |
|
| Q |
319 |
ctgaagcaacccatatgattgttgtaagtatgaaagataggtcctctttggtatctagtttaggccaccaaggttcatttcttttgtcagcgtgaccctt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34467293 |
ctgaagcaacccatatgattgttgtaagtatgaaagataggtcctctttggtatctagtttaggccaccaaggttcatttcttttgtcagcgtgaccctt |
34467392 |
T |
|
| Q |
419 |
acacttcatctcactc |
434 |
Q |
| |
|
|||||| || |||||| |
|
|
| T |
34467393 |
acacttgatttcactc |
34467408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 6320317 - 6320381
Alignment:
| Q |
272 |
atatcctccaaaagggtattgaccaaaatttatagcagcatgttgtcctgaagcaacccatatga |
336 |
Q |
| |
|
|||||||||| | ||||||||||||||||| | ||| ||||| ||| ||||||||| |||||||| |
|
|
| T |
6320317 |
atatcctccatatgggtattgaccaaaattaacagctgcatgatgtgctgaagcaatccatatga |
6320381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 6330779 - 6330843
Alignment:
| Q |
272 |
atatcctccaaaagggtattgaccaaaatttatagcagcatgttgtcctgaagcaacccatatga |
336 |
Q |
| |
|
|||||||||| | || |||||||||||||| | ||| ||||| ||| ||||||||| |||||||| |
|
|
| T |
6330779 |
atatcctccatatggatattgaccaaaattaacagctgcatgatgtgctgaagcaatccatatga |
6330843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University