View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14006_low_2 (Length: 628)
Name: NF14006_low_2
Description: NF14006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14006_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 557; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 6 - 610
Target Start/End: Original strand, 34725488 - 34726092
Alignment:
| Q |
6 |
agaacgttcttgagaaatggatttagtcgcatatgaatcccactgattggttgacagaagagagagagcacaagtaaagtcttgtgtagcatttgtatca |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34725488 |
agaatgttcttgagaaatggatttagtcgcatatgaatcccactgattggttgacagaagagagagagcacaagtaaagtcttgtgtagcatttgtatca |
34725587 |
T |
|
| Q |
106 |
gaaaagttcatgaaatcttctacacctgcaagagttnnnnnnnntcagcacaaaaatgtggcaaacctggattaacactcttggttgcaaggattttgga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34725588 |
gaaaagttcatgaaatcttctacacctgcaagagttaaaaaaaatcagcacaaaaatgtggcaaacctggattaacactcttggttgcaaggattttgga |
34725687 |
T |
|
| Q |
206 |
tgtaaaatggaaattggagtcatgagaaagcatagtgacagtacttggtgtgtcaatgttgtcttttgaaggcttcatgagaaaatcttttgcttggggg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34725688 |
tgtaaaatggaaattggagtcatgagaaagcatagtgacagtacttggtgtgtcaatgttgtcttttgaaggcttcaagagaaaatcttttgcttggggg |
34725787 |
T |
|
| Q |
306 |
agcttgctgttgtgcatgttttgccaggctaaatttgtagcagtcttggaattagcaaatggactcatctgttgcttcccatctgcagaaccaaaatata |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34725788 |
agcttgctgttgtgcatgttttgccaggctaaatttgtagcagtcttggaattagtaaatggactcatctgttgcttcccatctgcagaaccaaaatata |
34725887 |
T |
|
| Q |
406 |
ttagaagatagaagacaacagtaaaatttgaatcattttgaaatgaatgacttgcaattaactataataaacctataaatcaaccaaaagtggatgttct |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34725888 |
ttagaagatagaagacaacagtaaaatttgaatcattgtgaaatgaatgacttgcaattaactataataaacctataaatcaaccaaaagtggatgttct |
34725987 |
T |
|
| Q |
506 |
ctggtctaagttttgactaatagcaatttgaagttgtatttttactaaatcagtttttaacgaatggcgcactcatacaaatctagttagtaaagacttc |
605 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34725988 |
ctggtctaagttttgactaacagcaatttgaagttgtatttttactaaatcaggttttaacgaatggcgcactcatacaaatctagttagtaaagacttc |
34726087 |
T |
|
| Q |
606 |
ggctt |
610 |
Q |
| |
|
||||| |
|
|
| T |
34726088 |
ggctt |
34726092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 6 - 610
Target Start/End: Original strand, 34729545 - 34730152
Alignment:
| Q |
6 |
agaacgttcttgagaaatggatttagtcgcatatgaatcccactgattggttgacagaagagagagagcacaagtaaagtcttgtgtagcatttgtatca |
105 |
Q |
| |
|
|||| ||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
34729545 |
agaatgttctagagacatggatttagtcgcatatgaatcccatggattggttgacagaagagagagagcacaaataaagtcttgttcatcatttgtatca |
34729644 |
T |
|
| Q |
106 |
gaaaagttcatgaaatcttctacacctgcaagagttnnnnnnnntcagcacaa-aaatgtggca-aacctggattaacactcttggttgcaaggattttg |
203 |
Q |
| |
|
|||| | | |||||||||||||||||||||| |||| ||||||||| ||| ||| | ||||| ||| | ||||||||||||||| | |||| |
|
|
| T |
34729645 |
gaaacggtaatgaaatcttctacacctgcaa-agttataaaaaatcagcacaataaacgtgaaataacctcgatcgatactcttggttgcaagaactttg |
34729743 |
T |
|
| Q |
204 |
gatgtaaaatggaaattggagtcatgagaaagcatagtgacagtacttggtgtgtcaatgttgtcttttgaaggcttcatgagaaaatcttttgcttggg |
303 |
Q |
| |
|
||||||||||||| | |||| |||| ||||| |||||||||||||| | |||||| | ||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
34729744 |
gatgtaaaatggacaatggaatcatcagaaaacatagtgacagtaccttgtgtgttagcgttgtcttttgcaggcttcaagagaaaatcttttgcttggg |
34729843 |
T |
|
| Q |
304 |
ggagcttgctgttgtgcatgttttgccaggctaaatttgtagcagtcttggaattagcaaatggactcatctgttgcttcccatctgcagaaccaaaata |
403 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
34729844 |
ggagcttgctgttctgcatgttttgccaggctaaatttgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcggaaccaaaata |
34729943 |
T |
|
| Q |
404 |
tattagaagatagaagacaacagtaaaatttgaatcattttgaaatgaatgacttgcaattaactataataaacctataaatcaaccaaaagtggatgtt |
503 |
Q |
| |
|
||||||||| || |||| | ||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||| |||| ||||||||||||| |
|
|
| T |
34729944 |
tattagaagttataagagagcagtaaaatttgaatcattgagaaatgaatgacttgcaattaactacaacaaacctacaaaacaactaaaagtggatgtt |
34730043 |
T |
|
| Q |
504 |
ctctggtctaagttttgactaatagc--aatttgaagttgtatttttactaaatcagtttttaacgaatggcgcactcatacaaatctagttagtaaaga |
601 |
Q |
| |
|
|| || |||| |||| |||||| ||| ||||| ||||||| || |||| ||||||| |||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
34730044 |
ctttgatctatgtttcgactaacagcaaaatttaaagttgttttattacaaaatcaggttttaaagaatggcatactcatacaaatctagttagtaaaga |
34730143 |
T |
|
| Q |
602 |
cttcggctt |
610 |
Q |
| |
|
|||| |||| |
|
|
| T |
34730144 |
cttcagctt |
34730152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 313 - 610
Target Start/End: Original strand, 38610387 - 38610677
Alignment:
| Q |
313 |
tgttgtgcatgttttgccaggctaaatttgtagcagtcttggaattagcaaatggactcatctgttgcttcccatctgcagaaccaaaatatattagaag |
412 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
38610387 |
tgttgtgcatgttttgccaggctaaatatgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcagaaccgaaatatattagaag |
38610486 |
T |
|
| Q |
413 |
atagaagacaacagtaaaatttgaatcattttgaaatgaatgacttgcaattaactataataaacctataaatcaaccaaaagtggatgttctctggtct |
512 |
Q |
| |
|
| |||||| || ||||||||||| ||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| |||||| |
|
|
| T |
38610487 |
acagaagagaatagtaaaatttgcatcatcgcgaaatgaatgacttgcaattaactata--------acaaaacaaccaaaagtggatcttctttggtct |
38610578 |
T |
|
| Q |
513 |
aagttttgactaatagc--aatttgaagttgtatttttactaaatcagtttttaacgaatggcgcactcatacaaatctagttagtaaagacttcggctt |
610 |
Q |
| |
|
|| |||||||||| | | ||| | ||||||||||||||||||||||| |||||| | ||||| |||| || ||||||||||||||||||||||||||| |
|
|
| T |
38610579 |
aacttttgactaacaacaaaatgtcaagttgtatttttactaaatcaggttttaaag-atggcatactcgtaaaaatctagttagtaaagacttcggctt |
38610677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 313 - 610
Target Start/End: Original strand, 38795172 - 38795462
Alignment:
| Q |
313 |
tgttgtgcatgttttgccaggctaaatttgtagcagtcttggaattagcaaatggactcatctgttgcttcccatctgcagaaccaaaatatattagaag |
412 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
38795172 |
tgttgtgcatgttttgccaggctaaatatgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcagaaccgaaatatattagaag |
38795271 |
T |
|
| Q |
413 |
atagaagacaacagtaaaatttgaatcattttgaaatgaatgacttgcaattaactataataaacctataaatcaaccaaaagtggatgttctctggtct |
512 |
Q |
| |
|
| |||||| || ||||||||||| || || ||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| |||||| |
|
|
| T |
38795272 |
acagaagagaatagtaaaatttgcataatcgcgaaatgaatgacttgcaattaactata--------acaaaacaaccaaaagtggatcttctttggtct |
38795363 |
T |
|
| Q |
513 |
aagttttgactaatagc--aatttgaagttgtatttttactaaatcagtttttaacgaatggcgcactcatacaaatctagttagtaaagacttcggctt |
610 |
Q |
| |
|
|| |||||||||| | | ||| | ||||||||||||||||||||||| |||||| | ||||| |||| || ||||||||||||||||||||||||||| |
|
|
| T |
38795364 |
aacttttgactaacaacaaaatgtcaagttgtatttttactaaatcaggttttaaag-atggcatactcgtaaaaatctagttagtaaagacttcggctt |
38795462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 182 - 529
Target Start/End: Original strand, 34720424 - 34720769
Alignment:
| Q |
182 |
actcttggttgcaaggattttggatgtaaaatggaaattggagtcatgagaaagcatagtgacagtacttggtgtgtcaatgttgtcttttgaaggcttc |
281 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||||||| || ||| |||| ||| |||||||||||| |||||||||| |||||||| |||||| | |||| |
|
|
| T |
34720424 |
actcttggtttcaaggactttagatgtaaaatggacatcggaatcatcagatagcatagtgacaaaacttggtgtgccaatgttgacttttgcatacttc |
34720523 |
T |
|
| Q |
282 |
atgagaaaatcttttgcttgggggagcttgctgttgtgcatgttttgccaggctaaatttgtagcagtcttggaattagcaaatggactcatctgttgct |
381 |
Q |
| |
|
| | ||||||||||| | |||||| || |||||| || ||||||||| ||||||||||| |||||||||| |||| ||||||||| |||||||||||| |
|
|
| T |
34720524 |
aagggaaaatcttttattcgggggaactcgctgttttgtatgttttgcaaggctaaatttatagcagtctttgaataggcaaatggattcatctgttgct |
34720623 |
T |
|
| Q |
382 |
tcccatctgcagaaccaaaatatattagaagatagaagacaacagtaaaatttgaatcattttgaaatgaatgacttgcaattaactataataaacctat |
481 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| ||| | | ||||||| || || ||| |||||||||||| ||| || |||||||||||||| || |
|
|
| T |
34720624 |
tcccatctgcagaactaaactatattagaagataagagagagcggtaaaatgtgcatgattgtgaaatgaatgatttgtaagtaactataataaac--at |
34720721 |
T |
|
| Q |
482 |
aaatcaaccaaaagtggatgttctctggtctaagttttgactaatagc |
529 |
Q |
| |
|
|||||||| |||| ||| || ||| |||| |||||||||||||||||| |
|
|
| T |
34720722 |
aaatcaactaaaattggctgctctttggtataagttttgactaatagc |
34720769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 34720082 - 34720201
Alignment:
| Q |
17 |
gagaaatggatttagtcgcatatgaatcccactgattggttgacagaagagagagagcacaagtaaagtcttgtgtagcatttgtatcagaaaagttcat |
116 |
Q |
| |
|
|||||| |||||| || ||||||||||||||| || ||||||||||||||||| |||||||||||| |||| ||||||| ||||||||| ||| | || |
|
|
| T |
34720082 |
gagaaacggatttggttgcatatgaatcccacggactggttgacagaagagaggaagcacaagtaaaatcttccgtagcatctgtatcagagaagctaat |
34720181 |
T |
|
| Q |
117 |
gaaatcttctacacctgcaa |
136 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
34720182 |
gaaatcttctacacctgcaa |
34720201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 38610305 - 38610393
Alignment:
| Q |
169 |
aacctggattaacactcttggttgcaaggattttggatgtaaaatggaaattggagtcatgagaaagcatagtgacagtacttggtgtg |
257 |
Q |
| |
|
|||||||||| | ||||||||||||||||| ||||||||||||||||| |||| | ||| ||||||||||||||||||||||| |||| |
|
|
| T |
38610305 |
aacctggattgatactcttggttgcaaggactttggatgtaaaatggacattgaaatcaacagaaagcatagtgacagtacttgttgtg |
38610393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 38795090 - 38795178
Alignment:
| Q |
169 |
aacctggattaacactcttggttgcaaggattttggatgtaaaatggaaattggagtcatgagaaagcatagtgacagtacttggtgtg |
257 |
Q |
| |
|
|||||||||| | ||||||||||||||||| ||||||||||||||||| |||| | ||| ||||||||||||||||||||||| |||| |
|
|
| T |
38795090 |
aacctggattgatactcttggttgcaaggactttggatgtaaaatggacattgaaatcaacagaaagcatagtgacagtacttgttgtg |
38795178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 38610139 - 38610216
Alignment:
| Q |
6 |
agaacgttcttgagaaatggatttagtcgcatatgaatcccactgattggttgacagaagagagagagcacaagtaaa |
83 |
Q |
| |
|
|||| ||||| |||| ||||||||| ||||||||||||||||| ||||| |||||||||| || |||||||||||||| |
|
|
| T |
38610139 |
agaatgttctagagacatggatttaatcgcatatgaatcccacggattgattgacagaagtgaaagagcacaagtaaa |
38610216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 38794923 - 38795000
Alignment:
| Q |
6 |
agaacgttcttgagaaatggatttagtcgcatatgaatcccactgattggttgacagaagagagagagcacaagtaaa |
83 |
Q |
| |
|
|||| ||||| |||| ||||||||| ||||||||||||||||| ||||| |||||||||| || |||||||||||||| |
|
|
| T |
38794923 |
agaatgttctagagacatggatttaatcgcatatgaatcccacggattgattgacagaagtgaaagagcacaagtaaa |
38795000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 372 - 525
Target Start/End: Original strand, 23481164 - 23481315
Alignment:
| Q |
372 |
atctgttgcttcccatctgcagaaccaaaatatattagaagatagaagacaacagtaaaatttgaatcattttgaaatgaatgacttgcaattaactata |
471 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||| || || ||||||||| ||| | |||||||||| | ||||| ||||| || |
|
|
| T |
23481164 |
atctgttgcttctcatctgcagaactaaaatatattagaagatagatgagaatgataaaatttgcatcgtcgtgaaatgaataatttgcacgtaactgta |
23481263 |
T |
|
| Q |
472 |
ataaacctataaatcaaccaaaagtggatgttctctggtctaagttttgactaa |
525 |
Q |
| |
|
|||||| |||||||||| |||| ||| || ||| |||| |||||||||||||| |
|
|
| T |
23481264 |
ataaac--ataaatcaactaaaattggctgctctttggtataagttttgactaa |
23481315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 287 - 395
Target Start/End: Complemental strand, 38496163 - 38496055
Alignment:
| Q |
287 |
aaaatcttttgcttgggggagcttgctgttgtgcatgttttgccaggctaaatttgtagcagtcttggaattagcaaatggactcatctgttgcttccca |
386 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||||| | |||| |||||||||| || | |||| | | ||||||||| | ||| |||| ||||| |
|
|
| T |
38496163 |
aaaatctttggtttgggggagcttgctgttgggcatgtctggccatgctaaatttgaagtattctttggaaaagcaaatgggcccattgcttgcctccca |
38496064 |
T |
|
| Q |
387 |
tctgcagaa |
395 |
Q |
| |
|
||||||||| |
|
|
| T |
38496063 |
tctgcagaa |
38496055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 38496541 - 38496485
Alignment:
| Q |
51 |
attggttgacagaagagagagagcacaagtaaagtcttgtgtagcatttgtatcaga |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||| ||| |||||| |
|
|
| T |
38496541 |
attggttgacagaagagagagagcacggttaacatcttgtgtagcacttggatcaga |
38496485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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